Jatropha Genome Database

JcCA0240561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0240561.10 - phase: 1 /partial
         (416 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023812001 assembled CDS                                       642   0.0  
GSVIVT01009758001 assembled CDS                                       535   e-152

>GSVIVT01023812001 assembled CDS
          Length = 608

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/406 (75%), Positives = 337/406 (83%), Gaps = 23/406 (5%)

Query: 11  VLKNFCKSWVYTVSSEVPSSNFCLAFFSNMAGDSKASLSNGTANIQSDPRRTYQVVVAAT 70
           VL +FCKSW+ ++S +  S +      S MA D+  SL NG ANIQ DP+RTYQVVVAAT
Sbjct: 78  VLLHFCKSWLCSLSFQSTSLSLHWVQDSIMASDTVVSLPNGNANIQPDPQRTYQVVVAAT 137

Query: 71  RDMGIGKEGKLPWRLPSDLKFFKDVTLTTSDSGRKNAVIMGRKTWESIPLEHRPLPGRLN 130
           RDMGIGK+GKLPWRLPSD+K FKD+T+T +D+ +KNAVIMGRKTWESIPLEHRPLPGRLN
Sbjct: 138 RDMGIGKDGKLPWRLPSDMKIFKDITMTVADTVKKNAVIMGRKTWESIPLEHRPLPGRLN 197

Query: 131 VVLTRSGSFDIATAENVVICGXXXXXXXXXXXXPYCLSIEKVFIIGGGQILRESLNAPGC 190
           VVLTRSGSFDIATAENVVICG            PYCLSIEKVF+IGGGQILRE+LNAPGC
Sbjct: 198 VVLTRSGSFDIATAENVVICGSMASALELLAASPYCLSIEKVFVIGGGQILREALNAPGC 257

Query: 191 DAIHITEIETSIDCDTFIPKIDSSVFQPWYSSFPIVENNVRYCFATYVRVRVSAVESHGQ 250
           DAIHITEIETS +CDTFIP IDS VFQPWYSSFP+VENN+RY F TYVRVR         
Sbjct: 258 DAIHITEIETSFECDTFIPAIDSLVFQPWYSSFPLVENNIRYSFMTYVRVR--------- 308

Query: 251 DNGLSSDNSYIKFEVKKFSFLPKMVFERHEEFLYLRLVQDIISDGNLKDDRTGTGTLSKF 310
                         +KKFSFLPKM+FERHEE++YLRLV+DIIS+G  +DDRTGTGTLSKF
Sbjct: 309 --------------IKKFSFLPKMIFERHEEYIYLRLVEDIISNGVQRDDRTGTGTLSKF 354

Query: 311 GCQMRFNLRRTFPLLTTKKVFWRGVVEELLWFISGSTNCKVLQEKGIHIWDGNASRDYLD 370
           GCQMRFNLR+TFPLLTTKKVFWRGVVEELLWFISGSTN KVLQEKGIHIWDGNASRDYLD
Sbjct: 355 GCQMRFNLRKTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASRDYLD 414

Query: 371 GIGLKDREEGDLGPVYGFQWRHFGARYTDMHADYTGQGFDQLLDVI 416
            IGL DREEGDLGP+YGFQWRHFGA Y DMHADYTGQGFDQLLDVI
Sbjct: 415 SIGLADREEGDLGPIYGFQWRHFGASYIDMHADYTGQGFDQLLDVI 460


>GSVIVT01009758001 assembled CDS
          Length = 469

 Score =  535 bits (1378), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 250/344 (72%), Positives = 285/344 (82%), Gaps = 23/344 (6%)

Query: 73  MGIGKEGKLPWRLPSDLKFFKDVTLTTSDSGRKNAVIMGRKTWESIPLEHRPLPGRLNVV 132
           MGIGK+GKLPW LPSDLKFFK++T+TTSD G+KNAV+MGRKTWESIPL +RPLPGRLNVV
Sbjct: 1   MGIGKDGKLPWNLPSDLKFFKELTMTTSDPGKKNAVVMGRKTWESIPLNYRPLPGRLNVV 60

Query: 133 LTRSGSFDIATAENVVICGXXXXXXXXXXXXPYCLSIEKVFIIGGGQILRESLNAPGCDA 192
           LTRSGSFD AT ENVVICG            PYCLSI+KVF+IGGGQILRE+LNAPGCDA
Sbjct: 61  LTRSGSFDNATVENVVICGSMPSALKLLAESPYCLSIDKVFVIGGGQILREALNAPGCDA 120

Query: 193 IHITEIETSIDCDTFIPKIDSSVFQPWYSSFPIVENNVRYCFATYVRVRVSAVESHGQDN 252
           IHIT+IETSI+CDTFIP ID+SVF PWYSS P++ENN+ Y F TYVR+++          
Sbjct: 121 IHITKIETSIECDTFIPTIDTSVFHPWYSSVPLLENNILYSFVTYVRLKIQG-------- 172

Query: 253 GLSSDNSYIKFEVKKFSFLPKMVFERHEEFLYLRLVQDIISDGNLKDDRTGTGTLSKFGC 312
                          F+FLPKM+FERH+EF+YLR +++IIS G  K D+TGTGT+SKFGC
Sbjct: 173 ---------------FTFLPKMIFERHDEFMYLRQLKEIISSGAHKADKTGTGTVSKFGC 217

Query: 313 QMRFNLRRTFPLLTTKKVFWRGVVEELLWFISGSTNCKVLQEKGIHIWDGNASRDYLDGI 372
           QMRFNLR +FPLLTTK+VFWRGVVEELLWFISGSTN KVLQ+K IHIWDGNASR+YLD I
Sbjct: 218 QMRFNLRLSFPLLTTKRVFWRGVVEELLWFISGSTNAKVLQKKDIHIWDGNASREYLDSI 277

Query: 373 GLKDREEGDLGPVYGFQWRHFGARYTDMHADYTGQGFDQLLDVI 416
           GL DREEGDLGP+YGFQWRHFGARYT+MHADY G+GFDQLLDVI
Sbjct: 278 GLTDREEGDLGPIYGFQWRHFGARYTNMHADYMGKGFDQLLDVI 321