Jatropha Genome Database

JcCA0238091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0238091.10 + phase: 2 /partial
         (183 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024083001 assembled CDS                                       232   6e-62

>GSVIVT01024083001 assembled CDS
          Length = 334

 Score =  232 bits (592), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 118/159 (74%), Positives = 121/159 (76%), Gaps = 2/159 (1%)

Query: 25  IKGNSRLSFADDMXXXXXXXXXXXXXXXXXGLVRGKFGKDPTVETSFLPDSXXXXXXXXX 84
           IKGNSRLSF+DD+                     GKFGKDPTVETSFLPDS         
Sbjct: 115 IKGNSRLSFSDDIENGSEEEDGENEGKESKKF--GKFGKDPTVETSFLPDSEREAEEQAE 172

Query: 85  XXXXXKQWLHEQEQIRNEPLEITYSYWDGAGHRRVIQARKGDSIGEFLRAVQQQLAPEFR 144
                K WL EQEQIRNEPLEITYSYWDGAGHRRVIQ RKGDSIGEFLRAVQQQLAPEFR
Sbjct: 173 RERLRKLWLREQEQIRNEPLEITYSYWDGAGHRRVIQVRKGDSIGEFLRAVQQQLAPEFR 232

Query: 145 EIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGP 183
           EIRTTSVENLLYVKEDLIIPHQHSFYELI+NKARGKSGP
Sbjct: 233 EIRTTSVENLLYVKEDLIIPHQHSFYELIINKARGKSGP 271