Jatropha Genome Database

JcCA0237851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0237851.10 - phase: 0 /pseudo/partial
         (101 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027958001 assembled CDS                                       101   6e-23
GSVIVT01010942001 assembled CDS                                        82   4e-17
GSVIVT01010940001 assembled CDS                                        81   1e-16
GSVIVT01035256001 assembled CDS                                        74   1e-14
GSVIVT01035262001 assembled CDS                                        73   2e-14
GSVIVT01008725001 assembled CDS                                        73   3e-14
GSVIVT01010939001 assembled CDS                                        69   4e-13
GSVIVT01020831001 assembled CDS                                        60   2e-10
GSVIVT01020832001 assembled CDS                                        59   6e-10
GSVIVT01027961001 assembled CDS                                        50   2e-07
GSVIVT01035266001 assembled CDS                                        47   2e-06

>GSVIVT01027958001 assembled CDS
          Length = 214

 Score =  101 bits (252), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 46/66 (69%), Positives = 55/66 (83%)

Query: 1  MAVIKVHGNPISTATQRVLATLYEKDLEFEFVHIDLATGEHKREPFISLNPFGQVPALEH 60
          MAV+KVHG+P STAT RV++ LYEK L+FEFV ID+  G+HK E F++LNPFGQVPA E 
Sbjct: 1  MAVLKVHGSPFSTATMRVVSALYEKGLQFEFVSIDMKVGQHKSEAFLALNPFGQVPAFED 60

Query: 61 GDLKLF 66
          GDLKLF
Sbjct: 61 GDLKLF 66


>GSVIVT01010942001 assembled CDS
          Length = 217

 Score = 82.4 bits (202), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 48/64 (75%)

Query: 3  VIKVHGNPISTATQRVLATLYEKDLEFEFVHIDLATGEHKREPFISLNPFGQVPALEHGD 62
           +K+HG P+ST T RVL  L+EK L+FE V ++L  GEHK+ PF++ NPFGQ+P LE GD
Sbjct: 2  ALKLHGIPMSTCTTRVLTCLHEKGLDFELVPVNLFAGEHKQPPFLAKNPFGQIPVLEDGD 61

Query: 63 LKLF 66
          L LF
Sbjct: 62 LTLF 65


>GSVIVT01010940001 assembled CDS
          Length = 217

 Score = 80.9 bits (198), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 47/64 (73%)

Query: 3  VIKVHGNPISTATQRVLATLYEKDLEFEFVHIDLATGEHKREPFISLNPFGQVPALEHGD 62
           +K+HG P+ST T RVL  L+EK L+FE V ++L  GEHK+ PF++ NPFGQ+P LE GD
Sbjct: 2  ALKLHGIPMSTCTTRVLTCLHEKGLDFELVPVNLFAGEHKQPPFLAKNPFGQIPVLEDGD 61

Query: 63 LKLF 66
            LF
Sbjct: 62 FTLF 65


>GSVIVT01035256001 assembled CDS
          Length = 213

 Score = 74.3 bits (181), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 44/64 (68%)

Query: 3  VIKVHGNPISTATQRVLATLYEKDLEFEFVHIDLATGEHKREPFISLNPFGQVPALEHGD 62
          V+KV+G   +   QRVLA L EK +EFE VH+DL +GE KR  F+   PFGQVP +E GD
Sbjct: 2  VMKVYGPVRAACPQRVLACLVEKGVEFEVVHVDLDSGEQKRPDFLLRQPFGQVPVVEDGD 61

Query: 63 LKLF 66
           +LF
Sbjct: 62 FRLF 65


>GSVIVT01035262001 assembled CDS
          Length = 213

 Score = 73.2 bits (178), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 43/64 (67%)

Query: 3  VIKVHGNPISTATQRVLATLYEKDLEFEFVHIDLATGEHKREPFISLNPFGQVPALEHGD 62
          V+KV+G  ++   QRVLA L EK LEFE VH+DL  GE KR  F+   PFGQV  +E GD
Sbjct: 2  VVKVYGAVMTACPQRVLACLVEKGLEFEVVHVDLDFGEQKRPEFLIRQPFGQVRVMEDGD 61

Query: 63 LKLF 66
           +LF
Sbjct: 62 FRLF 65


>GSVIVT01008725001 assembled CDS
          Length = 223

 Score = 72.8 bits (177), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 45/63 (71%)

Query: 4  IKVHGNPISTATQRVLATLYEKDLEFEFVHIDLATGEHKREPFISLNPFGQVPALEHGDL 63
          +KV+G P+STA  RVLA L EKD+ F+ + +D++ GEHK+  ++ + PFGQVP+ +   +
Sbjct: 5  VKVYGPPMSTAVSRVLACLLEKDVNFQLIPVDMSKGEHKKPDYLKIQPFGQVPSFQDESI 64

Query: 64 KLF 66
           LF
Sbjct: 65 SLF 67


>GSVIVT01010939001 assembled CDS
          Length = 425

 Score = 68.9 bits (167), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 48/66 (72%)

Query: 1  MAVIKVHGNPISTATQRVLATLYEKDLEFEFVHIDLATGEHKREPFISLNPFGQVPALEH 60
          MAV KV+G+  S AT +VLA L+E  L+FEFV +D++  +++++PF++++PFGQVP  E 
Sbjct: 1  MAVRKVYGSLDSPATLKVLACLFEHHLDFEFVPVDISASDNRKKPFLNMSPFGQVPVFED 60

Query: 61 GDLKLF 66
          G    F
Sbjct: 61 GGYTQF 66



 Score = 66.2 bits (160), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 2/66 (3%)

Query: 1   MAVIKVHGNPISTATQRVLATLYEKDLEFEFVHIDLATGEHKREPFISLNPFGQVPALEH 60
           MAV K++G   S +T R LA+L+E D+EFE + +D   GE K+ P  SL+PFG++P  + 
Sbjct: 211 MAVRKLYGALDSPSTMRALASLFEHDVEFELIPVDFQAGELKKMP--SLSPFGELPVFQE 268

Query: 61  GDLKLF 66
           GDL LF
Sbjct: 269 GDLTLF 274


>GSVIVT01020831001 assembled CDS
          Length = 216

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 3  VIKVHGNPISTATQRVLATLYEKDLEFEFVHIDLATGEHKREPFISLNPFGQVPALEHGD 62
          V+KV+G P     +RVL  L EK++EFE V +D+  GEHK   ++ L PFG VP ++ GD
Sbjct: 2  VVKVYG-PAFACPKRVLICLVEKEIEFETVPVDIIKGEHKDPEYLKLQPFGVVPVIQDGD 60

Query: 63 LKLF 66
            L+
Sbjct: 61 YTLY 64


>GSVIVT01020832001 assembled CDS
          Length = 215

 Score = 58.5 bits (140), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 1/64 (1%)

Query: 3  VIKVHGNPISTATQRVLATLYEKDLEFEFVHIDLATGEHKREPFISLNPFGQVPALEHGD 62
          V+KV+G   ++A +RVL  L EK++EFE + ID+  G++K   F+ L PFG VP ++ GD
Sbjct: 2  VVKVYGPDFASA-KRVLVCLIEKEVEFETLPIDIIKGQNKDPEFLKLQPFGVVPVIQDGD 60

Query: 63 LKLF 66
            LF
Sbjct: 61 YTLF 64


>GSVIVT01027961001 assembled CDS
          Length = 85

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 25/31 (80%)

Query: 36 LATGEHKREPFISLNPFGQVPALEHGDLKLF 66
          +  G+HK E F++LNPFGQ+PA E GDLKLF
Sbjct: 1  MKAGQHKSEAFLALNPFGQIPAFEDGDLKLF 31


>GSVIVT01035266001 assembled CDS
          Length = 63

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 30/41 (73%)

Query: 3  VIKVHGNPISTATQRVLATLYEKDLEFEFVHIDLATGEHKR 43
          V+KV+G+  +   QRVLA L EK +EFE VH+DL +G+ KR
Sbjct: 2  VVKVYGSVRAAFPQRVLACLIEKGVEFEVVHMDLDSGDQKR 42