Jatropha Genome Database

JcCA0237741.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0237741.10 - phase: 0 /pseudo/partial
         (457 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018103001 assembled CDS                                       376   e-104
GSVIVT01031567001 assembled CDS                                       281   6e-76
GSVIVT01026719001 assembled CDS                                       263   1e-70

>GSVIVT01018103001 assembled CDS
          Length = 966

 Score =  376 bits (966), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 172/204 (84%), Positives = 188/204 (92%)

Query: 97  DGSLKMYFDATIEVITTRDVKICGALGPCVSLHKKNDLVSDRETGQGGTYAWKLGTLTNK 156
           +G+L MYFD+TIE++TT+DVK+CGALGPCVSL KKN LVS+ E G+GGTY WKLGTLTNK
Sbjct: 294 NGNLMMYFDSTIEIVTTKDVKLCGALGPCVSLRKKNSLVSENEIGEGGTYMWKLGTLTNK 353

Query: 157 TCIAFFFEVGDEQKAHPGSAFFIQFITRYRHGNMGIQKRVTTAARRWVGNKSAEITAGFD 216
           TCIAFFF+VGDEQK  PGSAFFIQFITRY HGNMG++KRVTT ARRWVG  S EI AGFD
Sbjct: 354 TCIAFFFQVGDEQKVQPGSAFFIQFITRYLHGNMGMRKRVTTVARRWVGKHSPEIAAGFD 413

Query: 217 QEAAASVMARLAIHRAETCYARDVIRWLDDNLIRFASKFGDYIQEDPSTFRLSTNFSLYP 276
           QEAAASVMARLAIHRAETCYARDVIRWLD+ LIRFASKFGDYIQEDPS+FRLS NFSLYP
Sbjct: 414 QEAAASVMARLAIHRAETCYARDVIRWLDNELIRFASKFGDYIQEDPSSFRLSANFSLYP 473

Query: 277 QFMYYLRRSQFIDVFNSSPDETAF 300
           QFMY+LRRSQFID+FNSSPDETAF
Sbjct: 474 QFMYHLRRSQFIDIFNSSPDETAF 497


>GSVIVT01031567001 assembled CDS
          Length = 707

 Score =  281 bits (718), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 139/306 (45%), Positives = 195/306 (63%), Gaps = 7/306 (2%)

Query: 1   GMIVDSSLTNAIRTHRDLINGRAPYHDKSCSFYNRLSQRLSDASIVLDLFACSLDQVGVA 60
           G IV   L++ +R+H+DL    APY  K+  FY  +++++     VLDLFA +LDQVGVA
Sbjct: 243 GTIVSKDLSDPVRSHKDLDKDAAPYFKKAVQFYENIAKQMVSQGHVLDLFASALDQVGVA 302

Query: 61  ELKAPVERSGGFMMLGELFESDQFRKCLRHIFSRGEDGSLKMYFDATIEVITTRDVKICG 120
           E+K  VER+GG ++L E F    F+   + IF  GE  SL + F+ T+E+  ++D+KI G
Sbjct: 303 EMKVVVERTGGLVVLAESFGHSVFKDSFKRIFEEGEQ-SLGLSFNGTLEINCSKDIKIQG 361

Query: 121 ALGPCVSLHKKNDLVSDRETGQGGTYAWKLGTLTNKTCIAFFFEVGDEQKAHP----GSA 176
            +GPC SL KK   V+D   G+G T +WK+  L   TC+  FF++   ++++P       
Sbjct: 362 IIGPCTSLEKKGPSVADTVIGEGSTTSWKMCGLDKTTCLTVFFDISSSERSNPPGTSNPQ 421

Query: 177 FFIQFITRYRHGNMGIQKRVTTAARRWVGN--KSAEITAGFDQEAAASVMARLAIHRAET 234
            ++QFI  Y++     + RVTT  RRWV +   S E+  GFDQE AA VMARL   + ET
Sbjct: 422 LYLQFIVSYQNPEGQTRLRVTTVTRRWVDSAVSSEELVQGFDQETAAVVMARLTSLKMET 481

Query: 235 CYARDVIRWLDDNLIRFASKFGDYIQEDPSTFRLSTNFSLYPQFMYYLRRSQFIDVFNSS 294
               D  RWLD +LIR  SKFGDY ++DP++F L+  FSL+PQFM+ LRRSQF+ VFN+S
Sbjct: 482 EEGFDATRWLDRSLIRLCSKFGDYRKDDPASFTLNPCFSLFPQFMFNLRRSQFVQVFNNS 541

Query: 295 PDETAF 300
           PDETA+
Sbjct: 542 PDETAY 547


>GSVIVT01026719001 assembled CDS
          Length = 800

 Score =  263 bits (672), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 142/346 (41%), Positives = 196/346 (56%), Gaps = 47/346 (13%)

Query: 1   GMIVDSSLTNAIRTHRDLINGRAPYHDKSCSFYNRLSQRLSDASIVLDLFACSLDQVGVA 60
           G IV   L+  IR+H+DL    AP++ K+  FY  L+++L     VLDLFAC+LDQVGVA
Sbjct: 298 GAIVSKILSEPIRSHKDLDKDSAPHYHKAVKFYEGLAKQLVHQGHVLDLFACALDQVGVA 357

Query: 61  ELKAPVERSGGFMMLGELFESDQFRKCLRHIFSRGEDGSLKMYFDATIEVITTRDVKICG 120
           ELK  VER+GG ++L E F    FR  L+H+F +  D  L +  +   E+  ++D+K+ G
Sbjct: 358 ELKIAVERTGGIVVLAESFGHAVFRDSLKHVF-QSTDYDLGLSSNGIFEINCSKDIKVQG 416

Query: 121 ALGPCVSLHKKNDLVSDRETGQGGTYAWKLGTLTNKTCIAFFFEV-----GDEQKAHPGS 175
            +GPC SL KK  L SD   GQG T AWKL  L   T +   F+V      D       +
Sbjct: 417 IIGPCASLEKKGPLCSDTVVGQGNTSAWKLCGLDKDTSLCLIFDVVKKDIPDAIGQSTSN 476

Query: 176 AFFIQFITRYRHGNMGIQKRVTTAARRWVGNKSA-------------------------- 209
            F+ QF+T Y+HGN  ++ RVTT +RRW+    +                          
Sbjct: 477 QFYFQFLTYYQHGNGQMRLRVTTLSRRWIAGPGSIQAIFPRSEIPYYKQMITHHHILKIG 536

Query: 210 ---------------EITAGFDQEAAASVMARLAIHRAETCYARDVIRWLDDNLIRFASK 254
                          ++ AGFDQE AA VMAR+   + ET    D IRWLD +LI+  S+
Sbjct: 537 KLNKQKITKVRVSLRDLIAGFDQETAAVVMARVVSFKMETEAEFDPIRWLDRSLIQLCSR 596

Query: 255 FGDYIQEDPSTFRLSTNFSLYPQFMYYLRRSQFIDVFNSSPDETAF 300
           FGDY +++PS+F LS  FS++PQF+++LRRSQF+ VFN+SPDETA+
Sbjct: 597 FGDYQKDNPSSFSLSPRFSIFPQFIFHLRRSQFVQVFNNSPDETAY 642