Jatropha Genome Database

JcCA0237721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0237721.10 - phase: 1 /partial
         (357 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017506001 assembled CDS                                       263   7e-71
GSVIVT01010911001 assembled CDS                                       252   2e-67
GSVIVT01026445001 assembled CDS                                        94   9e-20
GSVIVT01018983001 assembled CDS                                        76   3e-14
GSVIVT01013538001 assembled CDS                                        69   4e-12
GSVIVT01030585001 assembled CDS                                        65   5e-11
GSVIVT01013506001 assembled CDS                                        58   7e-09

>GSVIVT01017506001 assembled CDS
          Length = 374

 Score =  263 bits (673), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 153/338 (45%), Positives = 204/338 (60%), Gaps = 24/338 (7%)

Query: 19  PIKSLFKFKSVSKHWLSLITNPLFSRRLFPFNSPCALFVRKSFRLENEFDFIMIDDKYSI 78
           PIKSL KFKSVSKHWLSLIT+P FSRR     +P +            F F+ +D     
Sbjct: 32  PIKSLLKFKSVSKHWLSLITDPHFSRRKNLKPNPVSAL----------FSFVPLD-PLQT 80

Query: 79  DAPFKTLEFIDD--TIRIIQSCNGLLLCSSVQFYLPEAKYYVYNPTTNQYAILPPLTG-S 135
            APF +L F+D    I I+QSCNGL  CSSV +   E KYY+YNPTT Q+  LPPL G S
Sbjct: 81  SAPFTSLTFVDHPRGIEILQSCNGLFCCSSVDYNDSERKYYIYNPTTKQFTTLPPLCGRS 140

Query: 136 ADEICGLYLAFDPLKSPNYKVIRLLQSEISEPDFQIEIYSSKINHEWKVSNAGFTLESLD 195
              + G+ LAFDP KS  YKV+ + + + S    QI+I SS     W+VS   F    + 
Sbjct: 141 VRRVLGVNLAFDPSKSHTYKVVCVQRCKSSYDHCQIQI-SSLETGPWRVSGVPFA-APIS 198

Query: 196 IGTHDGVFCNGAIHWYTDFGPSFYFDVDKEQVKEMAMPATPEEWYRRRVLYFRECRGHLY 255
           +    GV+ NGAIHW +    S YFD+++E V+EM MP  P++   R +  F E  GHL+
Sbjct: 199 VDFPSGVYWNGAIHWISPREASLYFDLNEELVREMPMPPVPDDSNERGIRCFGESCGHLH 258

Query: 256 LVEIYNAPSTKFNVWEMEKDYSGWIVKYRIDLDGIVRAFPGMIRSYLDPSALNY-YVFQI 314
           LVEIY + +T+FNV+EME+D+SGW VK+R+DL+G+  AFPG+I  Y +    +Y Y F +
Sbjct: 259 LVEIYESSTTQFNVYEMERDHSGWFVKFRVDLNGVALAFPGIIEGYHE--EYDYMYSFSV 316

Query: 315 MYIVKGXXXXXXXXXGSYLVLHIPTKIIRYNLKDKSFK 352
           + IV+           S+L LHIP K+I YN   KS++
Sbjct: 317 LCIVR-----REKEEDSFLALHIPGKVIGYNFSSKSYQ 349


>GSVIVT01010911001 assembled CDS
          Length = 415

 Score =  252 bits (644), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 141/351 (40%), Positives = 209/351 (59%), Gaps = 12/351 (3%)

Query: 11  LIQILLCLPIKSLFKFKSVSKHWLSLITNPLFSRRLFPFNSPCALFVRKSFRLENEFDFI 70
           L +I L  P+K L +F+SVSK WLSLI++P F  R    +S     V       N FDFI
Sbjct: 39  LTEIFLRTPVKPLLRFRSVSKRWLSLISDPHFCHRHARRSSASVPGVLLGLPNSN-FDFI 97

Query: 71  MIDDKYSIDAPFKTLEFIDD--TIRIIQSCNGLLLCSSVQFYLPEAKYYVYNPTTNQYAI 128
             D+K + + P ++L+FI D   ++++Q CNGLL CS+V+       YY+ N  T ++++
Sbjct: 98  SFDEKKASEPPLRSLDFIGDPLGVKVLQVCNGLLCCSTVRSLGTSRNYYICNLATRRFSV 157

Query: 129 LPP--LTGSADEICGLYLAFDPLKSPNYKVIRLLQSEISEPDFQIEIYSSKINHEWKVSN 186
           LPP   +G  D + G+ LAFDP KSP Y VI +   E+S   +QIEIYSS    +W++S 
Sbjct: 158 LPPPCSSGGRDTVFGINLAFDPSKSPYYSVICVRSCEVSISHYQIEIYSSGTG-DWRLSG 216

Query: 187 AGFTLESLDIGTHDGVFCNGAIHWYTDFGPSFYFDVDKEQVKEMAMPATPEE-WYRRRVL 245
             F     D+  +DGVF NGA+HW +  G S YF +D+ ++  M  P      W +RR+ 
Sbjct: 217 KPFR-APFDMVFYDGVFWNGAVHWISPSGASLYFGIDEGRIDTMPPPPPGPGGWGKRRIR 275

Query: 246 YFRECRGHLYLVEIYNAPSTKFNVWEMEKDYSGWIVKYRIDLDGIVRAFPGMIRSYLDPS 305
           +F E  GHL+++EIY   +T+F V+EME+DYS W V++ +DLD ++ AFP + ++YLD  
Sbjct: 276 HFGESGGHLHIIEIYGPRTTQFVVYEMERDYSNWGVRFSVDLDKVIAAFPEITQNYLDAH 335

Query: 306 ALNYYVFQIMYIVKGXXXXXXXXXGSYLVLHIPTKIIRYNLKDKSFKKLCD 356
            L YY + ++ +++G            L+L I  KII YN+KD SFK + D
Sbjct: 336 DLYYYAYNVLCLIRGGGNEEDFS----LLLQIRGKIICYNIKDGSFKNVYD 382


>GSVIVT01026445001 assembled CDS
          Length = 378

 Score = 94.4 bits (233), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 162/373 (43%), Gaps = 55/373 (14%)

Query: 12  IQILLCLPIKSLFKFKSVSKHWLSLITNPLFSRRLFPFNSPCA-LFVRKSFRLENEFDFI 70
           + +L  LP K+L   K V K W  +I++  F + L     P A  F ++ ++  +E    
Sbjct: 8   MDVLSRLPTKTLLGLKCVCKRWRRIISDRSFIQDLLQRPEPLAGFFFQERYQWCDE---- 63

Query: 71  MIDDKYSIDAPFKTLE----------FIDDTIRIIQSCNGLLLCSSVQFYLPEAKYYVYN 120
              D  +I     T+E          F+ + + I+ SCNGL+ C SV F  P+   +V N
Sbjct: 64  ---DISTISYIPATMEGTQVQQTIFSFLPEDVVILGSCNGLVCCRSV-FPSPDPSIFVCN 119

Query: 121 PTTNQYAILPPLTGSADEICGLYLAFDPLKSP-----NYKVIRLLQSEISEPD---FQIE 172
           P+  Q+  L  L  + D+     LAF+P +SP     N+KV+R+ Q++    D   F  E
Sbjct: 120 PSNKQWIRL--LETTPDKESSYGLAFNPFQSPIDMPTNFKVVRVSQAQTDMDDDSYFSFE 177

Query: 173 IYSSKINHEWKVSNAGFTLESLDIGTHDGVFCNGAIHWYTDFGPSFYFDVDKEQVKEMAM 232
           IYSS+    WK S       + ++  + G+F  G +HW TD      F+++ E    ++ 
Sbjct: 178 IYSSQAG-AWKKSKE-ICQCNHNLFKNKGIFVGGILHWLTDGDQVLSFNIENELSWLISA 235

Query: 233 P-------ATPEEWYRRRVLYFRECRGHLYLVEIYNAPSTKFNVWEMEKDY-SGWIVKYR 284
           P       A PE       +   E RG L+ + I         VW +E  Y S W + + 
Sbjct: 236 PFPTIHLTAIPE-------MCIGESRGRLHYIMI---SEDGLQVWALEDYYDSNWSLVHS 285

Query: 285 IDLDGIVRAFPGMIRSYLDPSALNYYVFQIMYIVKGXXXXXXXXXGSYLVLHIPTKIIRY 344
             L+ +      ++ +  D  A    +  I ++               L++ + TKII Y
Sbjct: 286 TTLEVMEEENSQLLYNTRDRVAQRISIDSIPWM------DPLAFKDGLLLMRVSTKIILY 339

Query: 345 NLKDKSFKKLCDF 357
            +  +  ++LC+ 
Sbjct: 340 CIGTRKMEELCNL 352


>GSVIVT01018983001 assembled CDS
          Length = 412

 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 138/345 (40%), Gaps = 47/345 (13%)

Query: 18  LPIKSLFKFKSVSKHWLSLITNPLFSR-RLFPFNSPCALFVRKSFRLENE-FDFIMIDDK 75
           LP KSLF+F  V + W   I+ P F+  +   F++   LF    +++  E   FI +D K
Sbjct: 89  LPAKSLFRFTGVCRDWKMQISTPFFAHNQSNSFHAVSGLF----YQIAGEPPSFISLDPK 144

Query: 76  YSIDAPFKTLEFIDDTIRIIQSCNGLLLCSSVQFYLPEAKYYVYNPTTNQYAILPPLTGS 135
            +   P  +L+F+   + I  SCNGLL C   Q    +  YY+ NP T  +  LP     
Sbjct: 145 -AYGVPDPSLKFLPVPVDIRASCNGLLCC---QARTGDKAYYMCNPATKMWKKLPKPDAD 200

Query: 136 ADEICGLYLAFDPLK---SPNYKVIRLLQSEISEPDFQIEIYSSKINHEWKVSNAGFTLE 192
                 L + F+P       +YK++    S   +  ++ EIYSS     W++S     L 
Sbjct: 201 HGTDPALVVIFEPSLLNFVADYKLVCAFPSTDFDDGYEFEIYSSA-EGCWRISRE-ICLG 258

Query: 193 SLDIGTHDGVFCNGAIHWYTDFGPSFYFDVDKEQVKEM-AMPATPEEWYRRRVLYFREC- 250
              +    GV  NG ++W    G    FD+ +E+ + +  M           V+  + C 
Sbjct: 259 DRKLLPSPGVHVNGIVYWQMKHGVLVAFDLARERSQLIYGMKGA------LCVMQGKLCS 312

Query: 251 -RGHLYLVEIYNAPSTKFNVWEMEKDYSGWIVKYRIDLDGIVRAFPGMIRSYLDPSALNY 309
              H + V +    +   N  EM      W+ K  I+               LDPSAL  
Sbjct: 313 VSMHGWTVTVNVLSNVYSNTMEMHSKARTWVQKRLIN---------------LDPSALGA 357

Query: 310 YVFQIMYIVKGXXXXXXXXXGSYLVLHIPTKIIRYNLKDKSFKKL 354
              +   +V              +V+H  T I  Y++K K    L
Sbjct: 358 GSCKQPSVV--------FADSDTVVIHDGTTIFSYDMKSKETSAL 394


>GSVIVT01013538001 assembled CDS
          Length = 711

 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 134/314 (42%), Gaps = 52/314 (16%)

Query: 11  LIQILLCLPIKSLFKFKSVSKHWLSLITNPLFSRRLFPFNSPCALFVRKSFRLENEFDFI 70
           ++ IL  LP+KSL +F+ V K W +LI++P               FV    R +++   I
Sbjct: 9   MVDILSRLPVKSLLRFRCVCKAWCTLISHP--------------QFVETHLRQQHKRPVI 54

Query: 71  MIDDKYSIDAPFKTLEFIDD-----------TIRIIQSCNGLLLCSSV--QFYL--PEAK 115
            +   +S+D P    +   D           T  ++ SCNGLL        FY   P  K
Sbjct: 55  GLVVPHSVDDPLHKDDLAVDLELHLGIPNKRTTTVLDSCNGLLCVVDCYYGFYSLKPPQK 114

Query: 116 YYVYNPTTNQYAILPPLTGSADEICGLYLAFDPLKSPNYKVIRLLQSEISEPDFQIEIYS 175
             ++NP+T Q   +P  +    + C     +DP  S +YK++R+  + + +    I+I++
Sbjct: 115 LILWNPSTRQCNHIPCPSFVGYQNCMYSFFYDP-GSDDYKIVRIF-TFLGKDKTGIDIFT 172

Query: 176 SKINHEWKVSNAGFTLESLDIGTHDGVFCNGAIHW----YTDFGPS-----FYFDVDKEQ 226
            K N   +V     ++    IG     + NG +HW    Y  +G         F + +E+
Sbjct: 173 LKTNKWRRVEETHSSV----IGYWSATYFNGNLHWLAFRYGGYGEDERSSMVAFSLREEK 228

Query: 227 VKEMAMPATPEEWYRRRVLYFRECRGHLYLVEIYNAPSTKFNVWEMEKDYSGWI-VKYRI 285
            +EM +P+      +R V   R   G L +  +Y         + +++ +   I + YR+
Sbjct: 229 FQEMELPS------QRAVFGLRVLGGCLCVDGLYTNDKWVMEEYGIKESWKSLIAIPYRV 282

Query: 286 DLDGIVRAFPGMIR 299
             DG     P ++R
Sbjct: 283 G-DGSSWKLPRVLR 295


>GSVIVT01030585001 assembled CDS
          Length = 423

 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 137/310 (44%), Gaps = 44/310 (14%)

Query: 10  SLIQILLCLPIKSLFKFKSVSKHWLSLITNPLFS----RRLFPFNSPCALFVRKSFRLEN 65
           +L+ +LL LP+KS+ +FK V + W +L  +P F     RR    N+ C L    S   E 
Sbjct: 25  NLVDVLLRLPVKSIIRFKCVCQSWQTLFNDPDFINMNLRRAITHNNCCMLLKYLSSSEEE 84

Query: 66  EFDFIMIDD-----KYSIDAPFKTLEFIDDTIRIIQSCNGL--LLCSSVQFYLPEAKYYV 118
            +      D     +  +  P KT     D   I+ S NGL  L  S+ +        ++
Sbjct: 85  VYSLRCDKDFAEFRRLQVPVPSKT-----DYYHIVGSSNGLICLTESNNKGSYVTVDTFL 139

Query: 119 YNPT-TNQYAILPP-----LTGSADEICGLYLAFDPLKSPNYKVIRLLQSEISEPDFQIE 172
           +NP+ T Q+  LP      +  S   + GL  AF P +  +YKV+R++   +    +++ 
Sbjct: 140 WNPSVTAQWKPLPKYLINNMMTSPFMVVGLGFAFHP-QIDDYKVVRIVYF-LKSKTYEVH 197

Query: 173 IYSSKINHEWKVSNAGFTLESLDIGTHDGVFCNGAIHWYT-----DFGPS----FYFDVD 223
           +YS K    WK  +A       D  T    F NGA+HW         G S      FD+ 
Sbjct: 198 VYSLK-QDAWKNIDAKVHCHIHD--TVSRTFVNGALHWLAAKKNQGRGKSDDLILSFDMV 254

Query: 224 KEQVKEMAMPATP-EEWYRRRVLYFRECRGHLYLVEIYNAPSTKFN--VWEMEK--DYSG 278
           ++ ++EM +P    +E   ++ L   + +G L  V +YNA     N  +W M++    S 
Sbjct: 255 EDNLREMILPEFGYDESSTQKCL--ADYKG-LLSVLVYNAHRCNDNCDIWVMDEYGVASS 311

Query: 279 WIVKYRIDLD 288
           W  ++   LD
Sbjct: 312 WTKRFTFCLD 321


>GSVIVT01013506001 assembled CDS
          Length = 423

 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 130/298 (43%), Gaps = 54/298 (18%)

Query: 10  SLIQILLCLPIKSLFKFKSVSKHWLSLITNPLF---SRRLFPFNSPCALFVR-------K 59
           +LI I L LP+KS+ +F+ V K W +L  +P F     R    NS   L  +       +
Sbjct: 24  NLIDIHLRLPVKSIVRFRCVCKSWCTLFDDPDFISMHLRQASANSNGRLLFKHLSSSEQE 83

Query: 60  SFRLENEFDFIMIDDKYSIDAPFKTLEFIDDTIRIIQSCNGLLLCSSVQF---YLPEAKY 116
            + L +   F  +  +  +  P KT     D  +I+ S NGL+  +   F   YL     
Sbjct: 84  IYSLRSNIAFAEV-RRLEVPVPSKT-----DYYQIVGSSNGLICLTESNFKGSYL-SLNL 136

Query: 117 YVYNPTTNQYAILPPLT----GSADEICGLYLAFDPLKSPNYKVIRL---LQSEISEPDF 169
           +++NP   ++  LP        S   + GL  AF P+ + +YKV+R+   ++++ SE D 
Sbjct: 137 FLWNPAIREFQTLPKYHINNFTSPLMVVGLGFAFHPVIN-DYKVVRIVYFMRNKTSEAD- 194

Query: 170 QIEIYSSKINHEWKVSNAGFTLESLDIGTHDGV---FCNGAIHWYTDFGPS--------F 218
              +YS +    W+  +A           H  V   F NGA+HW                
Sbjct: 195 ---VYSLRTG-SWRKVDANICCY-----IHSNVSRTFINGALHWLAGKKNEMDNTDNLIL 245

Query: 219 YFDVDKEQVKEMAMPATPEEWYRRRVLYFRECRGHLYLVEIYNAPSTKFN--VWEMEK 274
            FD+ K+  KE+ +P    +   R+ L   + +G L ++  Y+A  +  N  VW ME+
Sbjct: 246 SFDMAKDVFKEIMLPDFGYDELIRKCL--ADYKGSLSVL-FYDAYHSNENCDVWVMEE 300