Jatropha Genome Database

JcCA0237241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0237241.10 - phase: 1 /partial
         (222 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032902001 assembled CDS                                       178   2e-45

>GSVIVT01032902001 assembled CDS
          Length = 659

 Score =  178 bits (452), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 114/221 (51%), Positives = 126/221 (57%), Gaps = 9/221 (4%)

Query: 2   AEAQQPPHLFLSASNPKSLEDAKRLAENLLDTISLECGASRVSSSKVYNAVPPPQQLLAG 61
            E QQP HLFLS++N K LEDAK LAENLLDTI  ECGASR SS KVY AVPPPQQLL G
Sbjct: 312 GEGQQPLHLFLSSNNLKGLEDAKLLAENLLDTICAECGASRASSCKVYGAVPPPQQLLVG 371

Query: 62  VQNSGNENKLNAIPPAGLALSAMSSTP-PI--PATSVKLHVTNSQGTVYQPGGLINSXXX 118
           VQ+SGNE  +     A LA SA+SSTP P+  P T   +    SQG V Q GG  NS   
Sbjct: 372 VQSSGNELNVKTSSTACLASSAVSSTPTPLVSPLTVPGVSTGFSQGAVSQCGGFFNSGQP 431

Query: 119 XXXXXXXXXXSVXXXXXXXXXXXXXPQATPLQQVALALRQSTSPITSTVAPXXXXXXXXX 178
                     S+             PQATPLQQVALALRQS SP+TST+AP         
Sbjct: 432 QSNLVCYPPPSLTAGTSYSGYGGIYPQATPLQQVALALRQSPSPVTSTIAPSTSSASTVP 491

Query: 179 XXXXXXXXXXXXXXGKEKRPTQKRKFQELPIGLKDPAKCHQ 219
                          KEKR  Q+RKFQELP+ LK P K  Q
Sbjct: 492 MSSAASFSE------KEKRLPQRRKFQELPVALKGPTKPQQ 526