Jatropha Genome Database

JcCA0236591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0236591.10 + phase: 2 /pseudo/partial
         (422 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021381001 assembled CDS                                       262   2e-70
GSVIVT01031354001 assembled CDS                                       251   7e-67
GSVIVT01034989001 assembled CDS                                       204   6e-53
GSVIVT01030081001 assembled CDS                                       159   3e-39

>GSVIVT01021381001 assembled CDS
          Length = 877

 Score =  262 bits (670), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 122/160 (76%), Positives = 136/160 (85%), Gaps = 8/160 (5%)

Query: 263 MVYKFHEDEHGEVVAENKRSDLEPYIGLHYPATDIPQASRFLFKQSRVRMIVDCHATPVR 322
           MVYKFH+D+HGEVV+E +RSDLEPY+GLHYPATDIPQA+RFLFKQ+RVR+I DC+A  VR
Sbjct: 1   MVYKFHDDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRIICDCNAKAVR 60

Query: 323 IIQDEALMQPLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNDEEAIGGRNLMRL 382
           +IQ E L QPLCLV STLR+PHGCH QYM NMG IASLAMAV+INGND          +L
Sbjct: 61  VIQSEELKQPLCLVNSTLRSPHGCHLQYMFNMGCIASLAMAVVINGNDA--------TKL 112

Query: 383 WGLVVCHHTSARSIPFPLRYACEFLMQAFGLQLNMELQLA 422
           WGLVVCHHTS R +PFPLRYACEFLMQAFGLQL MELQLA
Sbjct: 113 WGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMELQLA 152


>GSVIVT01031354001 assembled CDS
          Length = 1124

 Score =  251 bits (640), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 116/187 (62%), Positives = 140/187 (74%), Gaps = 5/187 (2%)

Query: 240 GDIKLLCDTVVDCVRELTGYDRVMVYKFHEDEHGEVVAENKRSDLEPYIGLHYPATDIPQ 299
           G ++ LCDT+V  V ELTGYDRVM YKFH+D+HGEVV+E  +  LEPY+GLHYPATDIPQ
Sbjct: 216 GSLERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVVSEITKPGLEPYLGLHYPATDIPQ 275

Query: 300 ASRFLFKQSRVRMIVDCHATPVRIIQDEALMQPLCLVGSTLRAPHGCHAQYMANMGSIAS 359
           A+RFLF +++VRMI DC A  ++++QDE L   L L GSTLRAPH CH QYM NM SIAS
Sbjct: 276 AARFLFMKNKVRMICDCRAKHIQVLQDEKLPFDLTLCGSTLRAPHSCHVQYMENMNSIAS 335

Query: 360 LAMAVIINGNDEEAIGG-----RNLMRLWGLVVCHHTSARSIPFPLRYACEFLMQAFGLQ 414
           L MAV++N  DEE         +   RLWGLVVCHHT+ R +PFPLRYACEFL Q F + 
Sbjct: 336 LVMAVVVNDGDEEGESSNSGQPQKRKRLWGLVVCHHTTPRFVPFPLRYACEFLAQVFAIH 395

Query: 415 LNMELQL 421
           +N EL+L
Sbjct: 396 VNKELEL 402


>GSVIVT01034989001 assembled CDS
          Length = 982

 Score =  204 bits (520), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 104/153 (67%), Positives = 108/153 (70%), Gaps = 42/153 (27%)

Query: 270 DEHGEVVAENKRSDLEPYIGLHYPATDIPQASRFLFKQSRVRMIVDCHATPVRIIQDEAL 329
           DEHGEVVAE+KRSDLEPYIGLHYPATDIPQASRFLF+Q+RVRMIVDCHATPV +IQDE L
Sbjct: 179 DEHGEVVAESKRSDLEPYIGLHYPATDIPQASRFLFRQNRVRMIVDCHATPVLVIQDEGL 238

Query: 330 MQPLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNDEEAIGGRNLMRLWGLVVCH 389
           MQPLCLVGSTLRAPHGCHAQYMANMGS ASLAMA                          
Sbjct: 239 MQPLCLVGSTLRAPHGCHAQYMANMGSTASLAMA-------------------------- 272

Query: 390 HTSARSIPFPLRYACEFLMQAFGLQLNMELQLA 422
                           FLMQAFGLQLNMELQLA
Sbjct: 273 ----------------FLMQAFGLQLNMELQLA 289


>GSVIVT01030081001 assembled CDS
          Length = 915

 Score =  159 bits (402), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 86/184 (46%), Positives = 103/184 (55%), Gaps = 57/184 (30%)

Query: 240 GDIKLLCDTVVDCVRELTGYDRVMVYKFHEDEHGEVVAENKRSDLEPYIGLHYPATDIPQ 299
           G+I LLCD +V    ELTGYDRVMVYKFHEDEHG                          
Sbjct: 166 GNISLLCDVLVKEASELTGYDRVMVYKFHEDEHG-------------------------- 199

Query: 300 ASRFLFKQSRVRMIVDCHATPVRIIQDEALMQPLCLVGSTLRAPHGCHAQYMANMGSIAS 359
                                  +I D        L GSTLR+PHGCHAQYMANMGS+AS
Sbjct: 200 ----------------------EVIAD--------LCGSTLRSPHGCHAQYMANMGSVAS 229

Query: 360 LAMAVIINGNDEEAIGGRNLMR-LWGLVVCHHTSARSIPFPLRYACEFLMQAFGLQLNME 418
           L M+V IN  D++    +   R LWGLVVCH+TS R +PFPLRYACEFL+Q FG+Q++ E
Sbjct: 230 LVMSVTINEEDDDTESEQQKGRKLWGLVVCHNTSPRFVPFPLRYACEFLVQVFGVQISKE 289

Query: 419 LQLA 422
           ++LA
Sbjct: 290 MELA 293