Jatropha Genome Database

JcCA0234331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0234331.10 + phase: 1 /pseudo/partial
         (154 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033965001 assembled CDS                                       137   2e-33
GSVIVT01002021001 assembled CDS                                       121   1e-28
GSVIVT01024747001 assembled CDS                                       105   9e-24
GSVIVT01010299001 assembled CDS                                        80   3e-16
GSVIVT01010297001 assembled CDS                                        77   4e-15
GSVIVT01007553001 assembled CDS                                        74   3e-14

>GSVIVT01033965001 assembled CDS
          Length = 242

 Score =  137 bits (345), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 57/78 (73%), Positives = 73/78 (93%)

Query: 1   VIFPSIMQLQKGITDLEDKKQNEICNIRYKRKDELERGKLSEIDIEREEECGICMEIGSK 60
           VIFPS++QLQ+GITD+E++KQ EIC  +YKRKD++++GKLSE+D+EREEECGICMEI SK
Sbjct: 96  VIFPSLLQLQRGITDVEERKQREICAAKYKRKDDMDKGKLSEVDVEREEECGICMEISSK 155

Query: 61  AVLPNCNHSLCLKCFRDW 78
            VLPNCNHSLC+KC+R+W
Sbjct: 156 VVLPNCNHSLCMKCYRNW 173


>GSVIVT01002021001 assembled CDS
          Length = 242

 Score =  121 bits (304), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 49/78 (62%), Positives = 67/78 (85%)

Query: 1   VIFPSIMQLQKGITDLEDKKQNEICNIRYKRKDELERGKLSEIDIEREEECGICMEIGSK 60
           VI+PS++QL++G+TD EDKKQ  +C  RY+R+D+ E  + S++DIEREEECGICME+ SK
Sbjct: 96  VIYPSLLQLERGLTDTEDKKQKAVCMERYRRRDDEEHKQYSDVDIEREEECGICMEMNSK 155

Query: 61  AVLPNCNHSLCLKCFRDW 78
            VLPNCNH++CLKC+R+W
Sbjct: 156 IVLPNCNHAMCLKCYREW 173


>GSVIVT01024747001 assembled CDS
          Length = 243

 Score =  105 bits (262), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 53/79 (67%), Positives = 68/79 (86%), Gaps = 1/79 (1%)

Query: 1   VIFPSIMQLQKGITDLEDKKQNEICNIRYKRKDE-LERGKLSEIDIEREEECGICMEIGS 59
           VIFPS++QLQ+GITDL+D+KQ E+C  +YKR+D+ LE+ KLSE ++E EEECGICME+ S
Sbjct: 96  VIFPSLLQLQRGITDLDDRKQKELCAKKYKRRDDGLEKRKLSEAELEWEEECGICMEMKS 155

Query: 60  KAVLPNCNHSLCLKCFRDW 78
           K VLPNC HSLCL C+R+W
Sbjct: 156 KVVLPNCGHSLCLMCYRNW 174


>GSVIVT01010299001 assembled CDS
          Length = 247

 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 51/78 (65%)

Query: 1   VIFPSIMQLQKGITDLEDKKQNEICNIRYKRKDELERGKLSEIDIEREEECGICMEIGSK 60
           VI+PS+ QL     +LED  +   C     RK   +R K+S+ +I+R++ECGICME  +K
Sbjct: 102 VIYPSLRQLGGQFIELEDTNKRSRCTEVLSRKRVEDRRKVSDKEIDRDDECGICMETCTK 161

Query: 61  AVLPNCNHSLCLKCFRDW 78
            VLPNC HS+C+ CF DW
Sbjct: 162 MVLPNCGHSMCICCFHDW 179


>GSVIVT01010297001 assembled CDS
          Length = 254

 Score = 76.6 bits (187), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 52/78 (66%)

Query: 1   VIFPSIMQLQKGITDLEDKKQNEICNIRYKRKDELERGKLSEIDIEREEECGICMEIGSK 60
           VI PS+ ++   I +L++ +        Y +K   E G+LS +D++RE+ECGIC+E  +K
Sbjct: 108 VILPSLQRIHGNIMELDNDEDGHPEIEMYGKKRTEEDGRLSNMDLKREDECGICLEPCTK 167

Query: 61  AVLPNCNHSLCLKCFRDW 78
            VLPNC H++C+ C+RDW
Sbjct: 168 MVLPNCCHAMCINCYRDW 185


>GSVIVT01007553001 assembled CDS
          Length = 252

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 49/78 (62%)

Query: 1   VIFPSIMQLQKGITDLEDKKQNEICNIRYKRKDELERGKLSEIDIEREEECGICMEIGSK 60
           VI PS+  L    ++L+  ++ +       RK   ER KL  +D+ERE+ECGIC+E  +K
Sbjct: 106 VILPSLQHLHSYSSELDYAQEEDQRLQPVVRKRPEERKKLLNVDLEREDECGICLEPCTK 165

Query: 61  AVLPNCNHSLCLKCFRDW 78
            VLPNC H +C+ CFRDW
Sbjct: 166 MVLPNCCHMMCISCFRDW 183