Jatropha Genome Database

JcCA0233921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0233921.10 - phase: 0 /pseudo/partial
         (412 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009879001 assembled CDS                                       193   1e-49
GSVIVT01021865001 assembled CDS                                        92   5e-19
GSVIVT01024465001 assembled CDS                                        60   1e-09

>GSVIVT01009879001 assembled CDS
          Length = 870

 Score =  193 bits (490), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 85/114 (74%), Positives = 99/114 (86%)

Query: 45  MNGYISPCSGDTQPPIFRSPVVGMEDILDNEVICAVYRLPDPHKHITRPPAGVIFPKKMV 104
           MNGYIS C GD  PPIFRSP+  +EDI+DN+VICA+YRLPD HKHITRPP GV FPKK+V
Sbjct: 755 MNGYISLCGGDPCPPIFRSPIASLEDIMDNQVICAIYRLPDAHKHITRPPVGVTFPKKIV 814

Query: 105 NSGDLKPDPVLWHEDSGRRPWESQRHNPPGTISGRQLGEVSHRLVMNSLQLKVD 158
           + GDLKP+PVLWHED+GRRPWE+ R N PGTISGRQLGE +HRLV+NSLQ+K +
Sbjct: 815 SVGDLKPEPVLWHEDNGRRPWENGRQNLPGTISGRQLGEAAHRLVVNSLQVKAE 868


>GSVIVT01021865001 assembled CDS
          Length = 1083

 Score = 91.7 bits (226), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/134 (41%), Positives = 78/134 (58%), Gaps = 4/134 (2%)

Query: 45   MNGYISPCSGDTQPPIFRSPVVGMEDILDNEVICAVYRLPDPHKHITRPPAGVIFPKKMV 104
            MNGY+  C  +     F S + G+++I  N+V    Y  P  HKHI  PP GV+ P+K++
Sbjct: 887  MNGYLWLCERNGWRSEFPSSISGLQNIEHNQVFNVTYVNPPHHKHIPEPPMGVVMPEKVL 946

Query: 105  NSGDLKPDPVLWHEDS-GRRPWESQRHNPPGTISGRQLGEVSHRLVMNSLQLKVDHNGYA 163
               D+KP PVLWHED+ GRR    +R   P  ISG  LGE +HRL+ N+L +K   N  +
Sbjct: 947  RPFDIKPLPVLWHEDNGGRRQQGRERPQVPRAISGPLLGEAAHRLLKNTLNIK--PNNTS 1004

Query: 164  NHLHIQTSPYAAAP 177
            + + +QT PY   P
Sbjct: 1005 SGMLLQT-PYRNMP 1017


>GSVIVT01024465001 assembled CDS
          Length = 845

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 45  MNGYISPCSGDTQPPIFRSPVVGMEDILDNEVICAVYRLPDPHKHITRPPAGVIFPKKMV 104
           MNGY+        P  F SP+  ME I  N+VI   Y+ P  H HI RP  GVI P K V
Sbjct: 683 MNGYMYISDRPVWPAEFYSPIEDMEMIAQNKVISIFYKCPSFHPHIPRPLEGVILPGKTV 742

Query: 105 NSGDLKPDPVLWHEDS---GRRPWESQR 129
               L   PVLWHE S   GR+  E  R
Sbjct: 743 IKPHLLRPPVLWHETSAVCGRKFSERSR 770