Jatropha Genome Database

JcCA0230221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0230221.10 - phase: 0 /partial
         (129 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027043001 assembled CDS                                       251   5e-68
GSVIVT01025209001 assembled CDS                                        62   7e-11
GSVIVT01035631001 assembled CDS                                        55   7e-09

>GSVIVT01027043001 assembled CDS
          Length = 241

 Score =  251 bits (642), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 119/129 (92%), Positives = 126/129 (97%)

Query: 1   MDFVSPEGLRLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQ 60
           M+FVSPEGLRLDGRRPMEMRQ+R +IGAVAKADGSA FEMGNTKVIAAVYGPREV+NRSQ
Sbjct: 1   MEFVSPEGLRLDGRRPMEMRQIRGEIGAVAKADGSAFFEMGNTKVIAAVYGPREVENRSQ 60

Query: 61  QINDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIY 120
           QI+DQALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI+
Sbjct: 61  QISDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120

Query: 121 VQVLSADGG 129
           VQVL ADGG
Sbjct: 121 VQVLQADGG 129


>GSVIVT01025209001 assembled CDS
          Length = 254

 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 5/122 (4%)

Query: 7   EGLRLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQQINDQA 66
           + +R DGR   + R    + GAV  A GSA  E GNTKVI +V+GPRE   ++   +   
Sbjct: 29  DWVRPDGRGFHQCRPAFLKTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMAYSGTG 87

Query: 67  LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIYVQVLSA 126
            + C  S   F+    +R    D +    S ++ + +E  I+    P++ +D++  VL +
Sbjct: 88  RLNCNVSYTTFAM--PIRGQGSDHKG--YSSMLHKALEGAIIVESFPKTTVDVFALVLES 143

Query: 127 DG 128
            G
Sbjct: 144 GG 145


>GSVIVT01035631001 assembled CDS
          Length = 243

 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 10/120 (8%)

Query: 10  RLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQQINDQALVR 69
           R DGR   ++R L      + +A GSA +  G+TKV+AAVYGP+    +    N+     
Sbjct: 5   RDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKK----NENPEKA 60

Query: 70  CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIYVQVLSADGG 129
           C   +    TG ++ KP+      E  +++++T+++  L ++ P +   I +QV+S DG 
Sbjct: 61  CIEVVWKPKTG-QIGKPE-----KEYEVILKRTLKSICLLNINPNTTTSIIIQVVSDDGA 114