Jatropha Genome Database

JcCA0229911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0229911.10 + phase: 0 /partial
         (185 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033498001 assembled CDS                                       338   7e-94

>GSVIVT01033498001 assembled CDS
          Length = 439

 Score =  338 bits (867), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 153/181 (84%), Positives = 171/181 (94%)

Query: 5   QNLAPKDQSRLSEPVKELDIFLSQIAAGVPLDIMPGPNDPANFSLPQQSLHRCLFPGSAT 64
           QNLA KDQSRLSEP+KELDI L+QIAAG+PLDIMPGP+DPANFSLPQQ LHRCLFPGS+ 
Sbjct: 243 QNLASKDQSRLSEPIKELDILLTQIAAGLPLDIMPGPDDPANFSLPQQPLHRCLFPGSSA 302

Query: 65  YNTFRSCTNPHCFELDNIRFLGTSGQNIDDLEKYSEAKDKLEFLERTLKWRHLAPTAPNT 124
           YN+FRSCTNPH FEL+NIRFLGTSGQN+DDLEKYSEAKDKLEF+ERTL+WRHLAPTAPNT
Sbjct: 303 YNSFRSCTNPHSFELENIRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNT 362

Query: 125 LGCYPFTDRDPFLIESCPHVYFVANQDKYGTRMLKGPEGQLIRLISIPKFSETGVAVMVS 184
           LGCYPFTDRDPFLIESCPHVYFV NQDKY TR++KG EGQ++RLI IPKF ETGVAV+++
Sbjct: 363 LGCYPFTDRDPFLIESCPHVYFVGNQDKYETRLIKGSEGQVVRLICIPKFCETGVAVVLN 422

Query: 185 I 185
           +
Sbjct: 423 M 423