Jatropha Genome Database

JcCA0225811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0225811.10 + phase: 0 /partial
         (147 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008827001 assembled CDS                                       264   1e-71
GSVIVT01008829001 assembled CDS                                       227   2e-60
GSVIVT01034237001 assembled CDS                                       201   1e-52
GSVIVT01003954001 assembled CDS                                       194   1e-50
GSVIVT01009387001 assembled CDS                                        78   1e-15
GSVIVT01000173001 assembled CDS                                        78   2e-15
GSVIVT01025700001 assembled CDS                                        61   2e-10

>GSVIVT01008827001 assembled CDS
          Length = 542

 Score =  264 bits (675), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 131/147 (89%), Positives = 138/147 (93%)

Query: 1   MQAGANHGYELLWVILIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPKYVKLCLWLLA 60
           +QAGANHG+ELLWV+LIGLIFALIIQSLAANLGVSTGKHLSELCKAEYP  VK CLWLLA
Sbjct: 70  LQAGANHGFELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLA 129

Query: 61  EVAVIAADIPEVIGTAFALNILFNIPVWVGVLITGCSTLLLLGLQRYGVRKLELLIAILV 120
           E+AVIAADIPEVIGTAFALNILF +PVW GVL TG STLLLLGLQRYGVRKLELLIA+LV
Sbjct: 130 EIAVIAADIPEVIGTAFALNILFKVPVWAGVLFTGFSTLLLLGLQRYGVRKLELLIAVLV 189

Query: 121 FIMAGCFFGEMSYVKPPAVEVIKGMFI 147
           FIMAGCFFGEMSYVKPPA  V+KGMFI
Sbjct: 190 FIMAGCFFGEMSYVKPPATGVLKGMFI 216


>GSVIVT01008829001 assembled CDS
          Length = 535

 Score =  227 bits (578), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 126/153 (82%), Positives = 134/153 (87%), Gaps = 6/153 (3%)

Query: 1   MQAGANHGYELLWVILIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPKYVKLCLWLLA 60
           +QAG+NHGYELLWV+LIGLIFAL+IQSLAANLGV TGKHLSELC+AEYPKYVK CLWLLA
Sbjct: 43  LQAGSNHGYELLWVVLIGLIFALVIQSLAANLGVITGKHLSELCRAEYPKYVKYCLWLLA 102

Query: 61  EVAVIAADIPEVI------GTAFALNILFNIPVWVGVLITGCSTLLLLGLQRYGVRKLEL 114
           E+AVIAADIPE I       TAFALNILF +PVW GVL TG STLLLLGLQRYGVRKLE+
Sbjct: 103 EIAVIAADIPEGIFITYSLRTAFALNILFKVPVWAGVLFTGLSTLLLLGLQRYGVRKLEM 162

Query: 115 LIAILVFIMAGCFFGEMSYVKPPAVEVIKGMFI 147
           LIA LVFIMAGCFF EMSYVKPPA  VIKGM I
Sbjct: 163 LIAGLVFIMAGCFFAEMSYVKPPASRVIKGMLI 195


>GSVIVT01034237001 assembled CDS
          Length = 541

 Score =  201 bits (511), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 97/147 (65%), Positives = 118/147 (80%)

Query: 1   MQAGANHGYELLWVILIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPKYVKLCLWLLA 60
           +Q+GA + YELLW+IL+    ALIIQSLAANLGV TGKHL+E C+ EYPK     LW+LA
Sbjct: 68  LQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRIEYPKVPNFILWVLA 127

Query: 61  EVAVIAADIPEVIGTAFALNILFNIPVWVGVLITGCSTLLLLGLQRYGVRKLELLIAILV 120
           E+AV+A DIPEVIGTAFALN+LFNIPVW GVL+TG STL+LL LQ+YGVRKLE  IA LV
Sbjct: 128 EIAVVACDIPEVIGTAFALNMLFNIPVWCGVLLTGLSTLVLLALQQYGVRKLEFFIAFLV 187

Query: 121 FIMAGCFFGEMSYVKPPAVEVIKGMFI 147
             +A CFF E+ Y KP + EV++G+F+
Sbjct: 188 LTIAACFFVELGYAKPNSSEVLRGLFV 214


>GSVIVT01003954001 assembled CDS
          Length = 510

 Score =  194 bits (493), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 101/147 (68%), Positives = 123/147 (83%)

Query: 1   MQAGANHGYELLWVILIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPKYVKLCLWLLA 60
           +QAGANH YELLW++L+GLIFA IIQS +ANLGV+TGKHLSE C+ EYPK V  CLW+LA
Sbjct: 39  LQAGANHKYELLWIVLVGLIFAFIIQSRSANLGVATGKHLSEHCRMEYPKPVNYCLWILA 98

Query: 61  EVAVIAADIPEVIGTAFALNILFNIPVWVGVLITGCSTLLLLGLQRYGVRKLELLIAILV 120
           EVAVIAADIPEVIGTAFA+NILF++P+W GVL+ G STLLLLGLQRYG+RKLE+ I  LV
Sbjct: 99  EVAVIAADIPEVIGTAFAINILFHVPIWGGVLLAGLSTLLLLGLQRYGIRKLEVAIGGLV 158

Query: 121 FIMAGCFFGEMSYVKPPAVEVIKGMFI 147
            ++ GCF   M + +P A +V+ GMF+
Sbjct: 159 LVVGGCFCSVMVHARPSAKDVVTGMFV 185


>GSVIVT01009387001 assembled CDS
          Length = 414

 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 60/103 (58%), Gaps = 2/103 (1%)

Query: 47  EYPKYVKLCLWLLAEVAVIAADIPEVIGTAFALNILFN--IPVWVGVLITGCSTLLLLGL 104
           EYP +    LW +AE+A+I ADI EVIG+A A+ IL    +P+W GV+IT     + L L
Sbjct: 24  EYPTWAGRLLWFMAELALIGADIQEVIGSAIAIKILSRGFLPLWAGVVITASDCFIFLFL 83

Query: 105 QRYGVRKLELLIAILVFIMAGCFFGEMSYVKPPAVEVIKGMFI 147
           + YGVRKLE + A+ +  M   F       KP   E++ G+ +
Sbjct: 84  ENYGVRKLEAVFAVFIATMGLSFAWMFGDAKPSGRELLIGVLV 126


>GSVIVT01000173001 assembled CDS
          Length = 410

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 64/99 (64%), Gaps = 8/99 (8%)

Query: 54  LCLWLLAEVAVIAADIPEVIGTAFALNILFN--IPVWVGVLITGCSTLLLLGLQRYGVRK 111
           + LW++AE+A+I ADI EVIG+A A+ IL N  +P+W GV+IT     + L L+ YGVRK
Sbjct: 28  MVLWVMAELALIGADIQEVIGSAIAIKILSNGVLPLWSGVIITAFDCFIFLFLENYGVRK 87

Query: 112 LELLIAILVFIMAGCF---FGEMSYVKPPAVEVIKGMFI 147
           LE + A L+  MA  F   FGE    KP  VE++ G+ I
Sbjct: 88  LEAVFAFLIATMAISFAWMFGE---AKPSGVELLLGILI 123


>GSVIVT01025700001 assembled CDS
          Length = 732

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 61/101 (60%)

Query: 1   MQAGANHGYELLWVILIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPKYVKLCLWLLA 60
           ++ GA  G++L+ ++L+    A++ Q LAA +GV TG+ L+++C  EY K   + L +  
Sbjct: 42  VEGGARFGFDLVALMLVFNFAAVLCQCLAARIGVVTGRDLAQICSDEYDKSTCMLLGIQT 101

Query: 61  EVAVIAADIPEVIGTAFALNILFNIPVWVGVLITGCSTLLL 101
           E+++IA D+  ++G A  L+++F   ++  V +T    +L 
Sbjct: 102 ELSMIALDLTMILGIAHGLHLMFGADLFSCVFLTAIDAVLF 142