Jatropha Genome Database

JcCA0225801.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0225801.10 + phase: 0 /partial
         (249 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036773001 assembled CDS                                       410   e-115
GSVIVT01036775001 assembled CDS                                       384   e-107
GSVIVT01025727001 assembled CDS                                        97   5e-21

>GSVIVT01036773001 assembled CDS
          Length = 405

 Score =  410 bits (1053), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/221 (93%), Positives = 216/221 (97%)

Query: 10  GRPKGVTPKFSLAPLVPRLSELLGIQVVKADDSIGPEVEKLVASLPEGGVLLLENVRFYK 69
           GRPKGVTPKFSLAPLVPRLSELLGIQ+VKADD IGPEVEKLV +LP+GGVLLLENVRFYK
Sbjct: 65  GRPKGVTPKFSLAPLVPRLSELLGIQIVKADDCIGPEVEKLVTALPDGGVLLLENVRFYK 124

Query: 70  EEEKNDPEHAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVG 129
           EEEKN+PE AKKLAS+ADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVG
Sbjct: 125 EEEKNEPEFAKKLASIADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVG 184

Query: 130 AVSNPKRPFAAIVGGSKVSSKIGVIESLLEKVDVLLLGGGMIFTFYKAQGLSVGSSLVEE 189
           AVS+PKRPFAAIVGGSKVSSKIGVIESLLEK D+LLLGGGMIFTFYKAQGLSVGSSLVEE
Sbjct: 185 AVSSPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEE 244

Query: 190 DKLNLATSLLEKAKAKGVSLLLPSDVVIADKFAPDANSKVC 230
           DKL+LATSLLEKAKAKGVSLLLP+DVVIADKFAPDANSK+ 
Sbjct: 245 DKLSLATSLLEKAKAKGVSLLLPTDVVIADKFAPDANSKIV 285


>GSVIVT01036775001 assembled CDS
          Length = 349

 Score =  384 bits (986), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/220 (89%), Positives = 207/220 (94%)

Query: 10  GRPKGVTPKFSLAPLVPRLSELLGIQVVKADDSIGPEVEKLVASLPEGGVLLLENVRFYK 69
           GRPKGVTPK+SL PLVPRLSELLG++V  A+D IG EV+ LVA +PEGGVLLLENVRFYK
Sbjct: 14  GRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVKILVAKIPEGGVLLLENVRFYK 73

Query: 70  EEEKNDPEHAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVG 129
           EEEKNDPE AKKLASLADLYVNDAFGTAHRAHASTEGV K+LKPSVAGFL+QKELDYLVG
Sbjct: 74  EEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYLVG 133

Query: 130 AVSNPKRPFAAIVGGSKVSSKIGVIESLLEKVDVLLLGGGMIFTFYKAQGLSVGSSLVEE 189
           AVSNPKRPFAAIVGGSKVSSKIGVIESLL KVDVLLLGGGMIFTFYKAQG  VGSSLVEE
Sbjct: 134 AVSNPKRPFAAIVGGSKVSSKIGVIESLLGKVDVLLLGGGMIFTFYKAQGYGVGSSLVEE 193

Query: 190 DKLNLATSLLEKAKAKGVSLLLPSDVVIADKFAPDANSKV 229
           DKL+LATSLLEKAK+KGVSLLLP+DVVIADKFA DANSKV
Sbjct: 194 DKLDLATSLLEKAKSKGVSLLLPADVVIADKFAADANSKV 233


>GSVIVT01025727001 assembled CDS
          Length = 581

 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 90/161 (55%)

Query: 54  LPEGGVLLLENVRFYKEEEKNDPEHAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLKP 113
           L +  +LLLEN+  +K E  N  + A++L+S+ D++VND+F  +H+  AST GV +F   
Sbjct: 86  LEKADILLLENLSEFKGELANCSKFAEQLSSVVDIFVNDSFSNSHKILASTVGVPRFCSA 145

Query: 114 SVAGFLLQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKVDVLLLGGGMIFT 173
            VAGF  ++ L  L  A    K+P  AI+GG  +  K   +  L  + D L+  G M F 
Sbjct: 146 CVAGFHFEESLCQLKMAAQINKKPCIAIIGGGNLFDKASAVRYLASRCDGLVFVGMMAFQ 205

Query: 174 FYKAQGLSVGSSLVEEDKLNLATSLLEKAKAKGVSLLLPSD 214
              A GL V  +L+E   L  A+++++ A+ + + +L P D
Sbjct: 206 IMHALGLHVPLNLLEGGPLKEASNIVQLAQNRKIPILYPKD 246