Jatropha Genome Database

JcCA0225051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0225051.10 + phase: 0 
         (204 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016473001 assembled CDS                                       174   3e-44
GSVIVT01016475001 assembled CDS                                       160   5e-40
GSVIVT01034108001 assembled CDS                                       148   2e-36
GSVIVT01033727001 assembled CDS                                       143   5e-35
GSVIVT01012219001 assembled CDS                                        64   4e-11
GSVIVT01020110001 assembled CDS                                        56   9e-09
GSVIVT01000425001 assembled CDS                                        56   1e-08
GSVIVT01012680001 assembled CDS                                        54   6e-08
GSVIVT01017668001 assembled CDS                                        53   8e-08
GSVIVT01000428001 assembled CDS                                        50   5e-07
GSVIVT01000437001 assembled CDS                                        49   2e-06
GSVIVT01000438001 assembled CDS                                        47   5e-06

>GSVIVT01016473001 assembled CDS
          Length = 690

 Score =  174 bits (441), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 83/189 (43%), Positives = 118/189 (62%), Gaps = 3/189 (1%)

Query: 17  AFNACPKCGSMEVPYPLSTGENCGNPNYRIYCNDGALKFLSSQGFYYKILSINPSSYKLV 76
           A N CP CG+  VPYPLSTG +CG+  Y+I C+ G L+F  +    Y I SI P   + V
Sbjct: 20  AANRCPDCGNTSVPYPLSTGADCGDQEYKIRCDAGTLRF-DTLNSSYSISSITPQIQRFV 78

Query: 77  IEPPLIQKNTCYSSDLGVGGLMLDENLPFNISTHNTVMLFNCSETILLSPLNCTSSSYCR 136
           I P     NTC ++DL   G+ L+E+LPFN+++ NT++  NC++T+L SPLNC+S S C 
Sbjct: 79  IRPASFAGNTCVTTDLPNQGIQLNESLPFNVTSSNTILYLNCTDTLLRSPLNCSSISLCH 138

Query: 137 RFEEGNREGSGCKGT-LCCHFLKDASMTSHRVRVRVGGCTAYTSVVDIKSIDPIDAW-NY 194
            +  G R+ + C+   +CC F    S TSH +RVR  GC AY S V++ +  P++ W   
Sbjct: 139 TYINGTRDAAACEDAPICCTFKAGGSTTSHSIRVRDAGCRAYRSFVNLDASTPVNRWPEP 198

Query: 195 GIELQWVPP 203
           G+E+QWV P
Sbjct: 199 GVEIQWVSP 207


>GSVIVT01016475001 assembled CDS
          Length = 254

 Score =  160 bits (404), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 78/187 (41%), Positives = 114/187 (60%), Gaps = 3/187 (1%)

Query: 19  NACPKCGSMEVPYPLSTGENCGNPNYRIYCNDGALKFLSSQGFYYKILSINPSSYKLVIE 78
           N CP CG+  VPYPLSTG +CG+  Y+I  ++G L F  S    Y I  I+P + +LVI 
Sbjct: 22  NRCPDCGTTPVPYPLSTGADCGDQEYKIRFDEGKLIF-DSVNSSYSIAFISPETQRLVIR 80

Query: 79  PPLIQKNTCYSSDLGVGGLMLDENLPFNISTHNTVMLFNCSETILLSPLNCTSSSYCRRF 138
           P     +TC ++D    G+ L+ +LPFN+++ NT+M  NC+E++  SPLNC+S S C  +
Sbjct: 81  PASFAGDTCITTDFPKQGIQLNNSLPFNVTSSNTIMFLNCTESLFRSPLNCSSISLCHTY 140

Query: 139 EEGNREGSGC-KGTLCCHFLKDASMTSHRVRVRVGGCTAYTSVVDIKSIDPIDAW-NYGI 196
             G ++ + C    +CC F    S T++ +RVR  GC+AY S V++    P+D W   G+
Sbjct: 141 INGTQDAAACVDAPICCTFKAGGSTTAYSIRVRESGCSAYQSFVNLDPNAPLDRWPEPGV 200

Query: 197 ELQWVPP 203
           ELQWV P
Sbjct: 201 ELQWVSP 207


>GSVIVT01034108001 assembled CDS
          Length = 636

 Score =  148 bits (373), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/185 (38%), Positives = 110/185 (59%), Gaps = 2/185 (1%)

Query: 21  CPKCGSMEVPYPLSTGENCGNPNYRIYCNDGALKFLSSQGFYYKILSINPSSYKLVIEPP 80
           C  CG + VPYPLSTG  CG+ +Y++ CN G L F +     Y I SINP + +++++P 
Sbjct: 28  CGDCGRIPVPYPLSTGPGCGDQSYKVRCNAGTLWFDALSQSSYVITSINPGTRRMIVKPA 87

Query: 81  LIQKNTCYSSDLGVGGLMLDENLPFNISTHNTVMLFNCSETILLSPLNCTSSSYCRRFEE 140
            +  NTC ++D+ VGGL LD   P+NI + NT+ML NCS  +L S +NC+ +S C  +  
Sbjct: 88  SLLANTCITTDIQVGGLQLDRISPYNIPSSNTIMLMNCSNAVLNSSVNCSPNSICHAYIR 147

Query: 141 GNREGSGCKGTL-CCHFLKDASMTSHRVRVRVGGCTAYTSVVDIKSIDPIDAW-NYGIEL 198
            N   + C+ T  CC F     + ++++ VR  GC AY S V++ +  P+  W   G+E+
Sbjct: 148 ENVVAAACRSTAKCCWFKAGGPVNAYKIGVRDEGCMAYQSFVNLATSLPVKRWPEPGLEI 207

Query: 199 QWVPP 203
           +W  P
Sbjct: 208 EWALP 212


>GSVIVT01033727001 assembled CDS
          Length = 605

 Score =  143 bits (360), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 74/197 (37%), Positives = 112/197 (56%), Gaps = 10/197 (5%)

Query: 16  SAFNACPKCGSMEVPYPLSTGENCGNPNYRIYCNDGALK--FLSSQGFYYKILSINPSSY 73
           S+   CP CGS++VPYPLST  NCG+P+Y + C+  + K  F    G  Y +L I  SS 
Sbjct: 27  SSQKDCPNCGSIQVPYPLSTNPNCGDPDYSLRCDGDSQKLYFDGLNGSSYLVLRIMASSQ 86

Query: 74  KLVIEPPLIQKNTCYSSDLGVG-GLMLDENLPFNISTHNTVMLFNCSETILLSPLNCTSS 132
           ++V++P      TC + D+ V  GL L++  PF I++ NT+ LFNCS  +L+SPLNCT S
Sbjct: 87  RMVVQPSPWLPGTCVTQDMPVSEGLWLNQTRPFKITSSNTIFLFNCSPRLLVSPLNCTPS 146

Query: 133 SYCRRFEEGN-----REGSGCKGTL--CCHFLKDASMTSHRVRVRVGGCTAYTSVVDIKS 185
           S C  + E +     +    C   L  CC F+     +++++R+   GC A+ S++ +  
Sbjct: 147 SLCHHYLESSGHVDRKRALQCASGLDPCCTFVAGGMPSAYKIRLHSSGCRAFRSILGLDP 206

Query: 186 IDPIDAWNYGIELQWVP 202
             P   W  G+E+QW P
Sbjct: 207 EKPPSQWEEGLEIQWAP 223


>GSVIVT01012219001 assembled CDS
          Length = 967

 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 98/223 (43%), Gaps = 29/223 (13%)

Query: 2   LFLVYFLLGLV-TRVSAFNACPK-------CGSMEVPYPLSTGENCGNPNYRIY--CNDG 51
           L L++F L LV +R     A P        CG++ V +P  TG  CG+P++  Y  C+ G
Sbjct: 676 LILIFFSLPLVHSRSDIVRAMPPNGTCSDVCGNITVKFPFGTGFGCGHPDFARYVKCSSG 735

Query: 52  ALKFLSSQGFYYKILSINPSSYKLVIEPPLIQKNTCYSSDLGVGGLMLDENLPFNISTHN 111
            L+F +  G  Y + SI+ SS  +++  PL+  +TC S     G   LD   PF I   +
Sbjct: 736 TLQFSTLTGI-YTVASIDYSSSTIIVNDPLM--STCTSMQ-NSGSFSLDRASPFTIMADD 791

Query: 112 TVMLFNCSETILLSPLN------------CTSSSYCRRFEEGNREGSGCKGTLCCHFLKD 159
             +L  CS T  +  LN            C     C+       + +    T C +   D
Sbjct: 792 VFVLLGCSTTSPVFDLNEDLCDTGSGSHACRGLYSCKGVTGIGLDPNAPTSTCCVYNSLD 851

Query: 160 ASMTSHRVRVRVGGCTAYTSVVDI--KSIDPIDAWNYGIELQW 200
              + + + +    C++Y S+  +     DP+  W +GI LQ+
Sbjct: 852 GVGSGYGLDLPKLQCSSYASIYGLGDDEGDPM-KWKFGISLQY 893


>GSVIVT01020110001 assembled CDS
          Length = 369

 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 6/123 (4%)

Query: 1   MLFLVYFLLGLVTRVSAFNACPKCGSMEVPYPLSTGENCGNPNYRIY--CNDGALKFLSS 58
           + FL   L+ L T + + +    CG+  + YP  +G  CG+P ++ Y  C+   L F++ 
Sbjct: 77  ITFLCISLILLPTLILSQSCQRTCGNQHLKYPFGSGPGCGDPRFQPYVTCSQEKLTFITH 136

Query: 59  QGFYYKILSINPSSYKLVIEPPLIQKNTCYSSDLGVGGLMLDENLPFNISTHNTVMLFNC 118
            G YY I +I+ +S  L I  P +   +C     G G   LD N PF+    N   L +C
Sbjct: 137 TG-YYTITNIDYNSQVLCITDPSMSTCSCAQPSKGFG---LDWNAPFSFHDGNVFALLDC 192

Query: 119 SET 121
           S T
Sbjct: 193 SIT 195


>GSVIVT01000425001 assembled CDS
          Length = 1004

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 21/153 (13%)

Query: 21  CPKCGSMEVPYPLSTGENCGNPNY-RIYCND--GALKFLSSQGFYYKILSINPSSYKLVI 77
           C  CG+  +PYPLSTG +CG+P Y   YC +  G + F+     YY++ SI P + +  I
Sbjct: 491 CKICGTNIIPYPLSTGTDCGDPKYLSFYCENSTGQVIFMRPNNTYYQVTSIRPEAKEFSI 550

Query: 78  EPPLIQKNTCYSSDLGVGGLMLDENLPFNIST-----HNTVMLFNCSETILLSPLN---- 128
           +  L + N   SSD     L  +++ PF + +      +T  L+  S+   L  +     
Sbjct: 551 Q--LGEDNCIASSDAMKKLLEFNQDSPFLVKSGCTAEKSTSSLYPFSDAEWLREIQIEWR 608

Query: 129 ------CTSSSYCRRFEEGNREGSGCKGTLCCH 155
                 C S+  C+ +   N   +G  G   CH
Sbjct: 609 PPLEPICNSTEDCKYWAHSNCNTTG-DGQKRCH 640


>GSVIVT01012680001 assembled CDS
          Length = 339

 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 23/174 (13%)

Query: 24  CGSMEVPYPLSTGENCGNPNYR--IYCNDGALKFLSSQGFYYKILSINPSSYKLVIEPPL 81
           CG + + YP    + CG+P YR  + C D     L +    Y + S++ S   +++  P 
Sbjct: 49  CGGIPINYPFGIDDGCGSPYYRHILVCPDSGQLELRTPSGRYPVRSLSYSDPHILVSDPF 108

Query: 82  IQKNTCYSSDLGVGGLMLDENLPFNISTHNTVMLFNCSE-TILLSPL------------- 127
           +       +        LD +  F++S  N  + FNCSE  +++ P              
Sbjct: 109 MWNCQDGDAFRPTRPFSLDTSTHFSLSPQNDYLFFNCSEDDVIVEPKPIFCERFPDRCDS 168

Query: 128 NCTSSSY-CRRFEEGNREGSGCKGTLCCHFLKDASMTSHRVRVRVGGCTAYTSV 180
           +C S+SY CR   E     S   G+ CC +   A+ +   +R+ +  C +YTSV
Sbjct: 169 SCDSASYLCRHLPEC---ASALGGSSCCSYYPKATES---LRLMLKYCASYTSV 216


>GSVIVT01017668001 assembled CDS
          Length = 293

 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 83/194 (42%), Gaps = 20/194 (10%)

Query: 24  CGSMEVPYPLSTGENCGNPNYRIYCNDGALKFLSSQGFYYKILSINPSSYKLVIEPPLIQ 83
           CG++ V YP    E CG P Y+   N     F  +    YK+ +I+     +V+  P + 
Sbjct: 35  CGTIPVKYPFGVDEGCGAPQYKGMLNCSTDLFFLTPSGNYKVQAIDYDKKTMVVYDPAM- 93

Query: 84  KNTCYSSDLGVGGLMLDENLPFNISTHNTV-MLFNCSETILLSPLNCTSSSYCRRFEEGN 142
            +TC         LM D          +TV +L NCS   + SP+     S C  F   +
Sbjct: 94  -STCSILQPHHDFLMSDIQSAMIPPASDTVFVLLNCS---IDSPVLNHYKSLCFNFSGHS 149

Query: 143 REG--SGCKGTLCCHFLKDAS--------MTSHRVRVRVGGCTAYTSVVD---IKSIDPI 189
            +   S C      H L ++S         T   + + +  C+ YTSV D   +K I P+
Sbjct: 150 CDELYSACTSFKLFHLLSNSSPPCCFTGYDTVKYMSMNILDCSHYTSVYDTDGLKGIGPL 209

Query: 190 DAWNYGIELQWVPP 203
           D W+YGI+L +  P
Sbjct: 210 D-WSYGIKLSYAIP 222


>GSVIVT01000428001 assembled CDS
          Length = 810

 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 7/75 (9%)

Query: 21  CPKCGSMEVPYPLSTGENCGNPNY-RIYCND--GALKFLSSQGFYYKILSINPSSYKLVI 77
           C  CGS  +PYPLSTG  CG+P Y    CN   G ++F    G  Y++ SINP + + VI
Sbjct: 178 CETCGSSMIPYPLSTGSKCGDPMYFNFECNSTTGQVQF-KVPGGAYRVTSINPETLRFVI 236

Query: 78  EPPLIQKNTCYSSDL 92
           +   +++  C S  L
Sbjct: 237 Q---LKEADCSSRSL 248


>GSVIVT01000437001 assembled CDS
          Length = 1130

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 26/167 (15%)

Query: 21  CPKCGSMEVPYPLSTGENCGNPNY-RIYCND--GALKFLSSQGFYYKILSINPSSYKLVI 77
           C  CGS  +PYPLSTG  CG+  Y    CN+  G ++F    G  Y++ SINP +   VI
Sbjct: 221 CETCGSNMIPYPLSTGSKCGDSTYFNFECNNTTGQVQF-KVPGGAYRVTSINPETLTFVI 279

Query: 78  EPPLIQKNTCYSSDL-----------GVGGLMLDENLPFNISTHNTVMLFNCSETILLSP 126
           +   +++  C S  L            V   +  +N    +S  N++ +   S    L P
Sbjct: 280 Q---LKEADCSSRSLIPPLNPPFHLTDVCKEVGTDNFGSEMSLKNSIEV-EISWDPPLEP 335

Query: 127 LNCTSSSYCRRFEE---GNREG---SGCKGTLCCHFLKDASMTSHRV 167
           + CTSS+ C+ +     G R+G   S  +     H     S   H +
Sbjct: 336 V-CTSSADCKDWPNSTCGTRDGTRSSENRANQVLHLYDSESRVKHLI 381


>GSVIVT01000438001 assembled CDS
          Length = 694

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 8/63 (12%)

Query: 21  CPKCGSMEVPYPLSTGENCGNPNY-RIYCNDG----ALKFLSSQGFYYKILSINPSSYKL 75
           C  CG+  +PYPLSTG  CG+P Y R  C++     + K + S    Y++ SI+P + K 
Sbjct: 200 CETCGTNMIPYPLSTGPKCGDPEYFRFNCDNDTGQVSFKVIDSS---YRVSSIDPKALKF 256

Query: 76  VIE 78
           VI+
Sbjct: 257 VIQ 259