Jatropha Genome Database

JcCA0224551.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0224551.10 + phase: 0 
         (106 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028253001 assembled CDS                                       176   3e-45

>GSVIVT01028253001 assembled CDS
          Length = 202

 Score =  176 bits (445), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 85/96 (88%), Positives = 91/96 (94%)

Query: 9   MRLMNFISEEQLDEAKKTRGERVDDGTAQRDRPLYEILKENKDKRDAEFNERFKHRPPKA 68
           MRLMNFISEEQLDE+KK RGER DDGTAQRDRPL+EILKENKDKRDAEFNERFKHRPPKA
Sbjct: 1   MRLMNFISEEQLDESKKARGERADDGTAQRDRPLFEILKENKDKRDAEFNERFKHRPPKA 60

Query: 69  LDEDETEFLEKLEMSRREYEQQMAVDEAEQLRSFQV 104
           LDEDETEFL+ LEMSRR+YEQQMA +EA+QLRSFQ 
Sbjct: 61  LDEDETEFLDNLEMSRRDYEQQMAEEEAQQLRSFQA 96