Jatropha Genome Database

JcCA0224481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0224481.10 - phase: 1 /pseudo/partial
         (333 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011024001 assembled CDS                                       412   e-116

>GSVIVT01011024001 assembled CDS
          Length = 878

 Score =  412 bits (1060), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/297 (71%), Positives = 233/297 (78%), Gaps = 4/297 (1%)

Query: 20  CQQCEASLQFLQSLCQQKLFRERLLRNKELCGKGGVLFLAHGILKLKITAPFVESSTVVA 79
           CQQCEASLQFLQSLCQQK+FRERLL+NKELCGKGGVL LA  ILKL IT  F ESST+VA
Sbjct: 222 CQQCEASLQFLQSLCQQKMFRERLLKNKELCGKGGVLLLAQAILKLCITPLFKESSTIVA 281

Query: 80  AVSRLKAKVLSILLHLCEAESISYLDEVASSPGSLDXXXXXXXXXXXXXXXXXXKDPKHL 139
           AVSRLKAKVLSI+L LCEAESISYLDEVAS PGSLD                   D K+L
Sbjct: 282 AVSRLKAKVLSIVLCLCEAESISYLDEVASYPGSLDLAKSIALEVLELLKTAFGGDQKYL 341

Query: 140 SACSERTFPMGLLRLNAMRLADIFSDDSNFRSYITTCFTKVLTAIFSLPHGEFLSIWCSS 199
           S  SE+T P GLL+LNAMRLADIFSDDSNFRS+IT  FT+VL AIFSLPHGEFLS WCSS
Sbjct: 342 SGGSEKTHPTGLLQLNAMRLADIFSDDSNFRSFITVYFTEVLAAIFSLPHGEFLSSWCSS 401

Query: 200 ELPPREEDATLEYDVFTAAGWFLDTFSSLDQSSAINLEITLIPSNMPQATYAHQRTSLFV 259
           +LP REEDA+LEYD F AAGW LD+FSS D  + ++ E T I +NM QA YAHQRTSL V
Sbjct: 402 DLPVREEDASLEYDPFVAAGWVLDSFSSPDLLNLMSSESTFIQNNMSQAPYAHQRTSLLV 461

Query: 260 KVIANLHCFVPNICEEQERNLFLHKFCECMRMNPSESLPGFSFTSGANKAITVCRNL 316
           KVIANLHCFVPNICEEQE++LFLHK  EC++M      P FSF+S A KA TVC+NL
Sbjct: 462 KVIANLHCFVPNICEEQEKDLFLHKCLECLQMER----PRFSFSSDAQKAATVCKNL 514