Jatropha Genome Database

JcCA0224291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0224291.10 + phase: 0 /partial
         (71 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022436001 assembled CDS                                       134   6e-33
GSVIVT01018933001 assembled CDS                                        78   7e-16
GSVIVT01008841001 assembled CDS                                        72   4e-14
GSVIVT01008825001 assembled CDS                                        67   2e-12
GSVIVT01026718001 assembled CDS                                        65   7e-12
GSVIVT01019825001 assembled CDS                                        58   1e-09

>GSVIVT01022436001 assembled CDS
          Length = 354

 Score =  134 bits (338), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 60/71 (84%), Positives = 67/71 (94%)

Query: 1  MLWVDKYRPKTLDQVIAHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFG 60
          MLWVDKYRPKTLD +I H+D+AQNLKKLVTEQDCPHLLFYGP GSGKKTLIMA+LRQ+FG
Sbjct: 1  MLWVDKYRPKTLDNLIVHDDVAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMAILRQMFG 60

Query: 61 ASAEKVKVENR 71
           SA+KVKVEN+
Sbjct: 61 PSADKVKVENK 71


>GSVIVT01018933001 assembled CDS
          Length = 708

 Score = 78.2 bits (191), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 48/70 (68%)

Query: 2   LWVDKYRPKTLDQVIAHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFGA 61
            W DK+RP +L+    H+  AQ LK+LV+   CPH+LF GPSGSGKK L MALLR+I+G 
Sbjct: 356 FWADKHRPASLNGFTLHKQEAQLLKQLVSSDICPHVLFKGPSGSGKKALTMALLREIYGD 415

Query: 62  SAEKVKVENR 71
           ++  +  E R
Sbjct: 416 ASWNISHELR 425


>GSVIVT01008841001 assembled CDS
          Length = 360

 Score = 72.4 bits (176), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 41/58 (70%)

Query: 3  WVDKYRPKTLDQVIAHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFG 60
          WV+KYRP++L  V AH DI   + +L +E   PHLL YGP G+GK + I+A+ R+++G
Sbjct: 39 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG 96


>GSVIVT01008825001 assembled CDS
          Length = 341

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 41/66 (62%)

Query: 3  WVDKYRPKTLDQVIAHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFGAS 62
          WV+KYRPK +  V   +++ + L   +   +CPH+LFYGP G+GK T  +A+  Q+FG  
Sbjct: 11 WVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70

Query: 63 AEKVKV 68
            K +V
Sbjct: 71 LYKSRV 76


>GSVIVT01026718001 assembled CDS
          Length = 530

 Score = 65.1 bits (157), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 37/58 (63%)

Query: 3   WVDKYRPKTLDQVIAHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFG 60
           W DKYRPK L   I + D A  L+ LV  +  PH +F G +G GKKT+I A LR++FG
Sbjct: 233 WADKYRPKALSDFICNRDKAVQLQDLVKVEQHPHFIFEGLAGVGKKTMISAFLREVFG 290


>GSVIVT01019825001 assembled CDS
          Length = 330

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 42/69 (60%)

Query: 1  MLWVDKYRPKTLDQVIAHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFG 60
          M WV+KYRP  +  ++ +ED    L+ +  + + P+L+  GP G+GK T ++AL  ++ G
Sbjct: 12 MPWVEKYRPTKVADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSVLALAHELLG 71

Query: 61 ASAEKVKVE 69
          A+  +  +E
Sbjct: 72 ANYREAVLE 80