Jatropha Genome Database

JcCA0220511.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0220511.20 + phase: 1 /partial
         (152 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007521001 assembled CDS                                       255   6e-69
GSVIVT01010328001 assembled CDS                                       251   7e-68
GSVIVT01001842001 assembled CDS                                       247   1e-66
GSVIVT01036751001 assembled CDS                                       227   2e-60
GSVIVT01013403001 assembled CDS                                       100   3e-22
GSVIVT01037170001 assembled CDS                                        99   8e-22
GSVIVT01037165001 assembled CDS                                        99   1e-21
GSVIVT01037176001 assembled CDS                                        86   7e-18
GSVIVT01001128001 assembled CDS                                        61   2e-10

>GSVIVT01007521001 assembled CDS
          Length = 343

 Score =  255 bits (651), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 124/152 (81%), Positives = 132/152 (86%)

Query: 1   TQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVV 60
           TQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLP+LNGKLTGMAFRVPTVDVSVV
Sbjct: 192 TQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMAFRVPTVDVSVV 251

Query: 61  DLTVRLXXXXXXXXXXXXXXXXSEGSMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIAL 120
           DLTVRL                SEG MKGILGYTEDDVVSTDF+GDNRSSIFDAKAGIAL
Sbjct: 252 DLTVRLEKAATYEQVKAAIKEESEGKMKGILGYTEDDVVSTDFIGDNRSSIFDAKAGIAL 311

Query: 121 NDNFVKLVSWYDNEWGYSSRVIDLICHIASVQ 152
           N+ F+K+V+WYDNEWGYSSRVIDLI H+AS +
Sbjct: 312 NEKFLKIVAWYDNEWGYSSRVIDLIVHMASCK 343


>GSVIVT01010328001 assembled CDS
          Length = 380

 Score =  251 bits (642), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 125/151 (82%), Positives = 131/151 (86%)

Query: 1   TQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVV 60
           TQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM+FRVPTVDVSVV
Sbjct: 230 TQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVV 289

Query: 61  DLTVRLXXXXXXXXXXXXXXXXSEGSMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIAL 120
           DLTVRL                SEG +KGILGYTEDDVVSTDF+GD+RSSIFDAKAGIAL
Sbjct: 290 DLTVRLEKSATYDEVKAAIKEESEGKLKGILGYTEDDVVSTDFIGDSRSSIFDAKAGIAL 349

Query: 121 NDNFVKLVSWYDNEWGYSSRVIDLICHIASV 151
           N NF+KLVSWYDNEWGYSSRVIDLI H+ASV
Sbjct: 350 NANFLKLVSWYDNEWGYSSRVIDLIRHMASV 380


>GSVIVT01001842001 assembled CDS
          Length = 337

 Score =  247 bits (631), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 121/152 (79%), Positives = 131/152 (86%)

Query: 1   TQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVV 60
           TQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT DVSVV
Sbjct: 186 TQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTADVSVV 245

Query: 61  DLTVRLXXXXXXXXXXXXXXXXSEGSMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIAL 120
           DLTVR                 SEG++KGILGYTED+VVS+DF+GD+RSSIFDAKAGIAL
Sbjct: 246 DLTVRTEKKASYDDIKAAIKAESEGNLKGILGYTEDEVVSSDFLGDSRSSIFDAKAGIAL 305

Query: 121 NDNFVKLVSWYDNEWGYSSRVIDLICHIASVQ 152
           N+NF+KLVSWYDNEWGYSSRV+DLI HI S +
Sbjct: 306 NENFIKLVSWYDNEWGYSSRVVDLIRHIDSTK 337


>GSVIVT01036751001 assembled CDS
          Length = 429

 Score =  227 bits (578), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 112/151 (74%), Positives = 124/151 (82%)

Query: 1   TQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVV 60
           TQKTVDGPSMKDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGMAFRVPT +VSVV
Sbjct: 275 TQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVV 334

Query: 61  DLTVRLXXXXXXXXXXXXXXXXSEGSMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIAL 120
           DLT RL                SEG +KGILGYT++DVVS DFVGD+RSSIFDAKAGI L
Sbjct: 335 DLTCRLKKSATYEDVKAAVKYASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGL 394

Query: 121 NDNFVKLVSWYDNEWGYSSRVIDLICHIASV 151
           + +F+KLV+WYDNEWGYS+RV+DLI H+A V
Sbjct: 395 SASFMKLVAWYDNEWGYSNRVLDLIEHMALV 425


>GSVIVT01013403001 assembled CDS
          Length = 453

 Score =  100 bits (248), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/130 (47%), Positives = 81/130 (62%), Gaps = 1/130 (0%)

Query: 22  NIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLXXXXXXXX-XXXXXX 80
           NI+P+STGAAKAV  VLP L GKL G+A RVPT +VSVVDL V +               
Sbjct: 292 NIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFR 351

Query: 81  XXSEGSMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSSR 140
             ++G +KGIL   +  +VS DF   + SS  DA   + + D+ VK+V+WYDNEWGYS R
Sbjct: 352 KAADGPLKGILAVCDVPLVSVDFKCSDVSSTIDASLTMVMGDDMVKVVAWYDNEWGYSQR 411

Query: 141 VIDLICHIAS 150
           V+DL   +A+
Sbjct: 412 VVDLAHLVAA 421


>GSVIVT01037170001 assembled CDS
          Length = 208

 Score = 99.0 bits (245), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 45/55 (81%), Positives = 51/55 (92%)

Query: 84  EGSMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALNDNFVKLVSWYDNEWGYS 138
           EG++K ILGYT+DDVVS+DF+GD RSSIF AKAGIALNDNF+KLVSWYDNEW YS
Sbjct: 63  EGNLKEILGYTKDDVVSSDFIGDRRSSIFYAKAGIALNDNFIKLVSWYDNEWVYS 117


>GSVIVT01037165001 assembled CDS
          Length = 180

 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/55 (81%), Positives = 51/55 (92%)

Query: 84  EGSMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALNDNFVKLVSWYDNEWGYS 138
           EG++K ILGYT+DDVVS+DF+GD RSSIF AKAGIALNDNF+KLVSWYDNEW YS
Sbjct: 35  EGNLKEILGYTKDDVVSSDFIGDRRSSIFYAKAGIALNDNFIKLVSWYDNEWVYS 89


>GSVIVT01037176001 assembled CDS
          Length = 166

 Score = 85.9 bits (211), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 40/48 (83%), Positives = 45/48 (93%)

Query: 84  EGSMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALNDNFVKLVSWY 131
           EG++K ILGYT+DDVVS+DFVGD RSSIF AKAGIALNDNF+KLVSWY
Sbjct: 63  EGNLKEILGYTKDDVVSSDFVGDCRSSIFYAKAGIALNDNFIKLVSWY 110


>GSVIVT01001128001 assembled CDS
          Length = 331

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 71/132 (53%), Gaps = 2/132 (1%)

Query: 2   QKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVD 61
           Q+  D  S +  R  RAA  NI+P+STGAAKAV  VLP L GKL G+A RVPT +VSVVD
Sbjct: 194 QRLFDA-SHRVLRPVRAAVLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTSNVSVVD 252

Query: 62  LTVRLXXXXXXXXXXXXXXXXS-EGSMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIAL 120
           L V +                S E  + GI    ++ +VS DF   + SS  D+   + +
Sbjct: 253 LVVLVNDGETFAEEVNAAFRNSAEKELNGIPSMCDEPLVSVDFRCSDVSSTVDSSLTMVM 312

Query: 121 NDNFVKLVSWYD 132
            D+ VK+V   D
Sbjct: 313 GDDMVKVVDLAD 324