Jatropha Genome Database

JcCA0219971.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0219971.10 - phase: 0 
         (70 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029079001 assembled CDS                                       120   1e-28
GSVIVT01000729001 assembled CDS                                        80   2e-16

>GSVIVT01029079001 assembled CDS
          Length = 496

 Score =  120 bits (302), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/70 (81%), Positives = 64/70 (91%), Gaps = 1/70 (1%)

Query: 1  MARKMLIDGELNHSNEEETNYDFDLFVIGAGSGGVRASRFSANYGAKKVGICELPYHPIS 60
          MARKMLIDGEL+  NEEET+YDFDLFVIGAGSGGVRA+RFSAN+GA KV ICELP+HP+S
Sbjct: 1  MARKMLIDGELSKPNEEETHYDFDLFVIGAGSGGVRAARFSANFGA-KVAICELPFHPVS 59

Query: 61 SDTAGGVGGT 70
          S+  GGVGGT
Sbjct: 60 SEVIGGVGGT 69


>GSVIVT01000729001 assembled CDS
          Length = 559

 Score = 79.7 bits (195), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/54 (70%), Positives = 45/54 (83%), Gaps = 1/54 (1%)

Query: 17  EETNYDFDLFVIGAGSGGVRASRFSANYGAKKVGICELPYHPISSDTAGGVGGT 70
           E  +YDFDLF IGAGSGGVRASRF+AN+G+  V +CELP+  ISS+T GGVGGT
Sbjct: 75  EPRHYDFDLFTIGAGSGGVRASRFAANFGS-SVAVCELPFATISSETTGGVGGT 127