Jatropha Genome Database

JcCA0217021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0217021.10 - phase: 2 /partial
         (227 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034416001 assembled CDS                                       320   3e-88

>GSVIVT01034416001 assembled CDS
          Length = 344

 Score =  320 bits (821), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 154/226 (68%), Positives = 179/226 (79%), Gaps = 2/226 (0%)

Query: 1   APIVAKCDRSRVLATWAPYCGNIAPTEFQIEFSSVRHLNPRQFVEKLSNELKVCGVVAGE 60
           APIVAKCDR RVL++WAP CGN+ P EF IEFSSVRHL PRQFVEKL  EL V GVVAGE
Sbjct: 120 APIVAKCDRKRVLSSWAPLCGNVTPLEFLIEFSSVRHLTPRQFVEKLYKELGVRGVVAGE 179

Query: 61  NYRFGYKAAGDASELVRLCEEYGMEAYIIKSVMDKNKDLRNMNLSDLKDRGQVSSTRVRH 120
           NYRFGYKAAGD+SELVRLCEE+GM AYIIK VMD N+D RN   S+ K+RGQVSSTRVRH
Sbjct: 180 NYRFGYKAAGDSSELVRLCEEFGMGAYIIKPVMDNNQDSRNTASSNSKERGQVSSTRVRH 239

Query: 121 ALAVGDMKYVSELLGRRHRLVMMLKDQKGLTSTSSKWKFSITRSCLLNLPPKDGFYENCF 180
           AL++GDMKYVSELLGR+HRL++  + Q+    TSSK K S  +SCLLNLPPK+G YENC 
Sbjct: 240 ALSIGDMKYVSELLGRQHRLILTAQYQEAF--TSSKHKVSAPKSCLLNLPPKEGLYENCS 297

Query: 181 LIFGNAEPVKCSVFIDSTYIHLEIDEIGLSNYNSSQAFQLMGVEFG 226
           L+  +  PV C V ID+T+IHLE DE+G   + +SQ    +GVEFG
Sbjct: 298 LLIDDENPVSCRVVIDTTHIHLEFDEVGPYKHLTSQGPWQLGVEFG 343