Jatropha Genome Database

JcCA0215901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0215901.10 - phase: 1 /partial
         (105 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032385001 assembled CDS                                       191   7e-50

>GSVIVT01032385001 assembled CDS
          Length = 360

 Score =  191 bits (484), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 90/105 (85%), Positives = 97/105 (92%)

Query: 1   EGYYGGVRLLMAICRVFYKHCKENGIDLHSRNFTLSYDTNIPRQTGLSGSSAIVTAALSC 60
           EGYYGGVRLLM+IC+VFY +CKEN IDLH  NFTLSYDTNIPRQ GLSGSSAIV AALSC
Sbjct: 80  EGYYGGVRLLMSICKVFYNYCKENNIDLHDGNFTLSYDTNIPRQAGLSGSSAIVAAALSC 139

Query: 61  LLDFYKVRHLIKVEIRPKLVLSAEQELGIVAGLQDRVAQVYGGLV 105
           LLDFYKVRHL+KVE+RP LVL+AE+E GIVAGLQDRVAQVYGGLV
Sbjct: 140 LLDFYKVRHLVKVEVRPNLVLNAEKEHGIVAGLQDRVAQVYGGLV 184