Jatropha Genome Database

JcCA0214811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0214811.10 - phase: 0 /pseudo
         (162 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037705001 assembled CDS                                       240   2e-64
GSVIVT01023831001 assembled CDS                                        58   2e-09

>GSVIVT01037705001 assembled CDS
          Length = 397

 Score =  240 bits (612), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 110/126 (87%), Positives = 121/126 (96%)

Query: 1   MHRQVIHTEPFIGQPKVKSAAAACRSINSTIQIVEHQEALRTHNALEIFSQYDVIVDATD 60
           +HRQ+IHTE ++GQPKV+SAAAACRSINSTIQIVEH+EAL T NALEI S+YD+++DATD
Sbjct: 64  LHRQIIHTEAYVGQPKVQSAAAACRSINSTIQIVEHKEALCTSNALEILSKYDLVIDATD 123

Query: 61  NAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYKGGPCYRCLFPTPPPTTACQRCAD 120
           N PSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYKGGPCYRCLFPTPPPTTACQRC+D
Sbjct: 124 NVPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYKGGPCYRCLFPTPPPTTACQRCSD 183

Query: 121 SGVLGV 126
           SGVLGV
Sbjct: 184 SGVLGV 189


>GSVIVT01023831001 assembled CDS
          Length = 618

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 2/114 (1%)

Query: 1   MHRQVIHTEPFIGQPKVKSAAAACRSINSTIQIVEHQEALRTHN-ALEIFSQYDVIVDAT 59
           ++RQ +  +  +GQ K K A  A       I I  +   ++  +  ++ F Q++V+++  
Sbjct: 36  LNRQFLFRQSHVGQSKAKVARDAVLRFRPHISITSYHANVKDPDFNVDFFKQFNVVLNGL 95

Query: 60  DNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYKGGPCYRCLFPTPPPTT 113
           DN  +R  ++  C+    PLV     G  GQ+TV+      CY C  P P P T
Sbjct: 96  DNLDARRHVNRLCLASDVPLVESGTTGFLGQVTVHVKGKTECYECQ-PKPTPKT 148