Jatropha Genome Database

JcCA0207121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0207121.10 + phase: 0 /pseudo
         (238 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034014001 assembled CDS                                       338   1e-93
GSVIVT01021923001 assembled CDS                                       102   1e-22

>GSVIVT01034014001 assembled CDS
          Length = 847

 Score =  338 bits (868), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 158/181 (87%), Positives = 171/181 (94%)

Query: 27  EETKKNKFREREASDDALGYPDIDEDALLNTQCPKNLELRWQTEVSSSIYASPLIADINS 86
           +E+ KNKFREREASDDALGYP++DEDALLNT+CP+NLELRWQTEVSSSIYA+PLIADINS
Sbjct: 27  QESNKNKFREREASDDALGYPNLDEDALLNTRCPRNLELRWQTEVSSSIYATPLIADINS 86

Query: 87  DGKLDIVVPSFVHYLEVLEGSDGDKMPGWPAFHQSTVHASPLLYDIDKDGVREIALATYN 146
           DGKLDIVVPSFVHYLEVLEGSDGDKMPGWPAFHQSTVH+SPLLYDIDKDGVREIALATYN
Sbjct: 87  DGKLDIVVPSFVHYLEVLEGSDGDKMPGWPAFHQSTVHSSPLLYDIDKDGVREIALATYN 146

Query: 147 GEVLFFRVSGYMMTEKLVVPRRSVKKDWHVGLNPDPVDRSHPDVHDEQLISEAAGKKPVS 206
           GEVLFFRVSGYMMT+KL VPRR V+KDW+VGLNPDPVDRSHPDV D+QL+ EAA  K  S
Sbjct: 147 GEVLFFRVSGYMMTDKLEVPRRRVRKDWYVGLNPDPVDRSHPDVKDDQLVQEAADMKLFS 206

Query: 207 H 207
            
Sbjct: 207 Q 207



 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)

Query: 67  WQTEVSSSIYASPLIADINSDGKLDIVVPSFVHYLEVLEGSDGDKMPGWPAFHQSTVHAS 126
           W T V S +  +P I D++ DG  D+VVP+    + VL G DG ++  +P      V   
Sbjct: 537 WVTHVKSLVPQAPTIGDVDGDGHTDVVVPTLSGNIYVLNGKDGLQVRPYPYRTHGRVMNQ 596

Query: 127 PLLYDIDKDGVRE--IALATYNGEVLFFRVSG 156
            LL D+ K G ++  + L T + +   + + G
Sbjct: 597 VLLVDLSKRGEKKKGLTLVTTSFDGYLYLIDG 628


>GSVIVT01021923001 assembled CDS
          Length = 79

 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/65 (73%), Positives = 54/65 (83%)

Query: 112 MPGWPAFHQSTVHASPLLYDIDKDGVREIALATYNGEVLFFRVSGYMMTEKLVVPRRSVK 171
           M GWPAFH STVH+ P L+DIDKDGVREIALATYNGEVLFF VSGYM+  KL V R  V+
Sbjct: 1   MSGWPAFHWSTVHSGPPLHDIDKDGVREIALATYNGEVLFFGVSGYMVINKLEVLRMRVQ 60

Query: 172 KDWHV 176
           KDW++
Sbjct: 61  KDWYM 65