Jatropha Genome Database

JcCA0206521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0206521.10 + phase: 0 
         (251 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032855001 assembled CDS                                       452   e-128
GSVIVT01033986001 assembled CDS                                       448   e-127
GSVIVT01024054001 assembled CDS                                       416   e-117
GSVIVT01008917001 assembled CDS                                       406   e-114

>GSVIVT01032855001 assembled CDS
          Length = 471

 Score =  452 bits (1163), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 215/251 (85%), Positives = 232/251 (92%), Gaps = 1/251 (0%)

Query: 1   MLPQKQAEEAIVPNFSETENEARQEELEDEHSMFNVKSFLWHGGSAWDAWFSCASNQVAQ 60
           MLPQ+QAEE +V   +ETE + R+E+  DE S  ++K+ LWHGGS +DAWFSCASNQVAQ
Sbjct: 1   MLPQRQAEEVMVSGLNETEGDEREEDKGDE-SQLSLKTLLWHGGSVYDAWFSCASNQVAQ 59

Query: 61  VLLTLPYSFSQLGMLSGILFQIFYGLMGSWTAYLISVLYIEYRTRKEKENVSFKNHVIQW 120
           VLLTLPYSFSQLGMLSG++FQIFYG++GSWTAYLISVLYIEYR+RKEKENVSFKNHVIQW
Sbjct: 60  VLLTLPYSFSQLGMLSGVIFQIFYGILGSWTAYLISVLYIEYRSRKEKENVSFKNHVIQW 119

Query: 121 FEVLDGLLGPYWKAAGLAFNCTFLLFGSVIQLIACASNIYYINDHLDKRTWTYIFGACCA 180
           FEVLDGLLGPYWKA GLAFNCTFLLFGSVIQLIACASNIYYIND LDKRTWTYIFGACCA
Sbjct: 120 FEVLDGLLGPYWKAMGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCA 179

Query: 181 TTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGVTHTGPKKLVLYFTGATNI 240
           TTVFIPSFHNYR+WSFLGLGMTTYTAWYLTIAA+V GQVE V HTGP KLVLYFTGATNI
Sbjct: 180 TTVFIPSFHNYRLWSFLGLGMTTYTAWYLTIAALVQGQVENVKHTGPTKLVLYFTGATNI 239

Query: 241 LYTFGGHAVTV 251
           LYTFGGHAVTV
Sbjct: 240 LYTFGGHAVTV 250


>GSVIVT01033986001 assembled CDS
          Length = 478

 Score =  448 bits (1153), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 221/251 (88%), Positives = 236/251 (94%), Gaps = 1/251 (0%)

Query: 1   MLPQKQAEEAIVPNFSETENEARQEELEDEHSMFNVKSFLWHGGSAWDAWFSCASNQVAQ 60
           MLPQKQAEEAIV N SE ++E ++++ EDE S F++K+ LWHGGSAWDAWFSCASNQVAQ
Sbjct: 1   MLPQKQAEEAIVSNISEADHEGKEDKEEDE-SFFSIKNALWHGGSAWDAWFSCASNQVAQ 59

Query: 61  VLLTLPYSFSQLGMLSGILFQIFYGLMGSWTAYLISVLYIEYRTRKEKENVSFKNHVIQW 120
           VLLTLPYSFSQLGMLSGI+FQIFYGL+GSWTAYLISVLYIEYR+RKEKENVSFKNHVIQW
Sbjct: 60  VLLTLPYSFSQLGMLSGIIFQIFYGLVGSWTAYLISVLYIEYRSRKEKENVSFKNHVIQW 119

Query: 121 FEVLDGLLGPYWKAAGLAFNCTFLLFGSVIQLIACASNIYYINDHLDKRTWTYIFGACCA 180
           FEVLDGLLGPYWKA GLAFNCTFLLFGSVIQLIACASNIYYIND LDKRTWTYIFGACCA
Sbjct: 120 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDKLDKRTWTYIFGACCA 179

Query: 181 TTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGVTHTGPKKLVLYFTGATNI 240
           TTVFIPSFHNYRIWSFLGLGMTTYTAWYL IAA++HGQ EGV H+ P KLVLYFTGATNI
Sbjct: 180 TTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAALIHGQSEGVAHSAPTKLVLYFTGATNI 239

Query: 241 LYTFGGHAVTV 251
           LYTFGGHAVTV
Sbjct: 240 LYTFGGHAVTV 250


>GSVIVT01024054001 assembled CDS
          Length = 489

 Score =  416 bits (1069), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 196/251 (78%), Positives = 218/251 (86%), Gaps = 5/251 (1%)

Query: 1   MLPQKQAEEAIVPNFSETENEARQEELEDEHSMFNVKSFLWHGGSAWDAWFSCASNQVAQ 60
           M   K  E  +V N+ E E E + ++++   S      F WHGGS +DAWFSCASNQVAQ
Sbjct: 1   MASDKVVETVMVGNYVEMETEGKPQDVKTRLS-----KFFWHGGSVYDAWFSCASNQVAQ 55

Query: 61  VLLTLPYSFSQLGMLSGILFQIFYGLMGSWTAYLISVLYIEYRTRKEKENVSFKNHVIQW 120
           VLLTLPYSFSQLGMLSGILFQ+FYGLMGSWTAYLIS+LY+EYRTRKE+E   F+NHVIQW
Sbjct: 56  VLLTLPYSFSQLGMLSGILFQLFYGLMGSWTAYLISILYVEYRTRKEREKADFRNHVIQW 115

Query: 121 FEVLDGLLGPYWKAAGLAFNCTFLLFGSVIQLIACASNIYYINDHLDKRTWTYIFGACCA 180
           FEVLDGLLG +W+  GLAFNCTFLLFGSVIQLIACASNIYYIND+LDKRTWTYIFGACCA
Sbjct: 116 FEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCA 175

Query: 181 TTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGVTHTGPKKLVLYFTGATNI 240
           TTVFIPSFHNYRIWSFLGL MTTYTAWYLT+A+++HGQ+EGV H+GP KLVLYFTGATNI
Sbjct: 176 TTVFIPSFHNYRIWSFLGLIMTTYTAWYLTVASLLHGQMEGVKHSGPSKLVLYFTGATNI 235

Query: 241 LYTFGGHAVTV 251
           LYTFGGHAVTV
Sbjct: 236 LYTFGGHAVTV 246


>GSVIVT01008917001 assembled CDS
          Length = 464

 Score =  406 bits (1044), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 192/250 (76%), Positives = 216/250 (86%), Gaps = 4/250 (1%)

Query: 2   LPQKQAEEAIVPNFSETENEARQEELEDEHSMFNVKSFLWHGGSAWDAWFSCASNQVAQV 61
           +  ++ E  +  N+ E E    +EE + + +   + +  WHGGS +DAWFSCASNQVAQV
Sbjct: 1   MASEKVETIVAGNYLEME----REEGDSKSTKSRLSALFWHGGSVYDAWFSCASNQVAQV 56

Query: 62  LLTLPYSFSQLGMLSGILFQIFYGLMGSWTAYLISVLYIEYRTRKEKENVSFKNHVIQWF 121
           LLTLPYSFSQLGMLSGILFQ+FYGLMGSWTAYLISVLY+EYRTRKE+E V F+NHVIQWF
Sbjct: 57  LLTLPYSFSQLGMLSGILFQLFYGLMGSWTAYLISVLYVEYRTRKEREKVDFRNHVIQWF 116

Query: 122 EVLDGLLGPYWKAAGLAFNCTFLLFGSVIQLIACASNIYYINDHLDKRTWTYIFGACCAT 181
           EVLDGLLG +W+  GL FNCTFLLFGSVIQLIACASNIYYIND+ DKRTWTYIFGACCAT
Sbjct: 117 EVLDGLLGKHWRNVGLLFNCTFLLFGSVIQLIACASNIYYINDNFDKRTWTYIFGACCAT 176

Query: 182 TVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGVTHTGPKKLVLYFTGATNIL 241
           TVFIPSFHNYRIWSFLGL MTTYT+WYLTIA+ +HGQVEGV H+GP K+VLYFTGATNIL
Sbjct: 177 TVFIPSFHNYRIWSFLGLMMTTYTSWYLTIASFIHGQVEGVKHSGPTKMVLYFTGATNIL 236

Query: 242 YTFGGHAVTV 251
           YTFGGHAVTV
Sbjct: 237 YTFGGHAVTV 246