Jatropha Genome Database

JcCA0205491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0205491.10 + phase: 2 /pseudo/partial
         (93 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033319001 assembled CDS                                        79   5e-16

>GSVIVT01033319001 assembled CDS
          Length = 1112

 Score = 78.6 bits (192), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 57/82 (69%), Gaps = 1/82 (1%)

Query: 13  HDCRQDIANNLIERLSDEEIAIRHQASKLISMIDPSLVMPALVHLLYSSDEGL-SYASTA 71
           H   QDI+ +L+E L DEE  I  QAS L+  IDP LV+PALV L+YSS+E + S AS A
Sbjct: 535 HSMWQDISKHLLECLGDEEEIINVQASNLLPKIDPLLVLPALVRLVYSSNERVQSSASDA 594

Query: 72  FTAMLQYHNQKPEVICMLLDCL 93
            TA+L+ HNQ  EV+ MLLD L
Sbjct: 595 MTALLKNHNQNYEVLSMLLDSL 616