Jatropha Genome Database

JcCA0200941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0200941.10 + phase: 0 /partial
         (135 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033651001 assembled CDS                                       261   9e-71
GSVIVT01028205001 assembled CDS                                       254   7e-69
GSVIVT01031313001 assembled CDS                                       225   5e-60
GSVIVT01031492001 assembled CDS                                       107   2e-24

>GSVIVT01033651001 assembled CDS
          Length = 445

 Score =  261 bits (666), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 120/135 (88%), Positives = 130/135 (96%)

Query: 1   METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNLVMVFGEITTK 60
           M+TFLFTSESVNEGHPDKLCDQ+SDA+LDACL QDP+SKVACETC+KTN+VMVFGEITTK
Sbjct: 93  MDTFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCSKTNMVMVFGEITTK 152

Query: 61  ANIDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGA 120
           A +DYEKIVRDTCR IGF S DVGLDAD+CKVLVNIEQQSPDIAQGVHGHL+K+PEEIGA
Sbjct: 153 AKVDYEKIVRDTCRGIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLSKKPEEIGA 212

Query: 121 GDQGHMFGYATDETP 135
           GDQGHMFGYATDETP
Sbjct: 213 GDQGHMFGYATDETP 227


>GSVIVT01028205001 assembled CDS
          Length = 235

 Score =  254 bits (650), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 122/131 (93%), Positives = 127/131 (96%)

Query: 1   METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNLVMVFGEITTK 60
           METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTN+VMVFGEITTK
Sbjct: 32  METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTK 91

Query: 61  ANIDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGA 120
           A+IDYEKIVRDTCR+IGF SDDVGLDAD+CKVLVNIEQQSPDIAQGVHGHLTKRPEEIGA
Sbjct: 92  ADIDYEKIVRDTCRTIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGA 151

Query: 121 GDQGHMFGYAT 131
           GDQGH+   AT
Sbjct: 152 GDQGHIHVLAT 162


>GSVIVT01031313001 assembled CDS
          Length = 299

 Score =  225 bits (573), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 109/135 (80%), Positives = 114/135 (84%), Gaps = 20/135 (14%)

Query: 1   METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNLVMVFGEITTK 60
           M+TFLFTSESVNEGHPDKLCDQISDAVLDACL QDPDSKVACETCTKTNLVM+FGEITTK
Sbjct: 7   MDTFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNLVMIFGEITTK 66

Query: 61  ANIDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGA 120
           AN+DYEKIVRDTCR++GF                    QSPDIAQGVHGHLTKRPEEIGA
Sbjct: 67  ANLDYEKIVRDTCRAVGF--------------------QSPDIAQGVHGHLTKRPEEIGA 106

Query: 121 GDQGHMFGYATDETP 135
           GDQGHMFGYATDETP
Sbjct: 107 GDQGHMFGYATDETP 121


>GSVIVT01031492001 assembled CDS
          Length = 178

 Score =  107 bits (267), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/105 (56%), Positives = 64/105 (60%), Gaps = 39/105 (37%)

Query: 1   METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNLVMVFGEITTK 60
           M+TFLFTSESVNEGHPDKLCDQ+SDA+LDACL QDP+SKVA                   
Sbjct: 1   MDTFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVAS------------------ 42

Query: 61  ANIDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQ 105
                                DVGLDAD+CKVLVNIEQQSPDIAQ
Sbjct: 43  ---------------------DVGLDADNCKVLVNIEQQSPDIAQ 66