Jatropha Genome Database

JcCA0199501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0199501.10 + phase: 0 /partial
         (161 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012141001 assembled CDS                                       158   1e-39
GSVIVT01015884001 assembled CDS                                       156   3e-39
GSVIVT01026252001 assembled CDS                                       134   2e-32
GSVIVT01014337001 assembled CDS                                       115   7e-27
GSVIVT01026250001 assembled CDS                                       113   5e-26
GSVIVT01035402001 assembled CDS                                        94   2e-20
GSVIVT01024696001 assembled CDS                                        69   7e-13
GSVIVT01032785001 assembled CDS                                        58   2e-09

>GSVIVT01012141001 assembled CDS
          Length = 522

 Score =  158 bits (399), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 74/128 (57%), Positives = 89/128 (69%)

Query: 32  DEVIDRSLARKYKXXXXXXXXXXXXXXXCLPIAGKFIPALRPEKDIFFIIKAFAAGVILS 91
           +E   R+ A +YK                LP  GK IPALRPE D+FF +KAFAAGVIL+
Sbjct: 208 EEQSSRTGATRYKLAAIFSILAASLIGVALPTLGKKIPALRPENDVFFAVKAFAAGVILA 267

Query: 92  TGFIHVLPDAFENLTSPCLDKNPWGKFPFTGFVAMVSAIGTLMVDAFATSYYSKSHLKNQ 151
           TGFIHVLPDAFE+LTSPCL ++PWG FPF+GFVAM+SAIGT+M+DAFAT +Y +      
Sbjct: 268 TGFIHVLPDAFESLTSPCLGESPWGSFPFSGFVAMLSAIGTMMMDAFATGFYQRLQRSKA 327

Query: 152 QSVSADEE 159
           Q V  DEE
Sbjct: 328 QPVKEDEE 335


>GSVIVT01015884001 assembled CDS
          Length = 340

 Score =  156 bits (395), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/123 (64%), Positives = 93/123 (75%)

Query: 14  FLLLLPSLAHGECTCEPEDEVIDRSLARKYKXXXXXXXXXXXXXXXCLPIAGKFIPALRP 73
           F++ LP+L  GEC C+ EDE  DR  A +YK               C+PI GK IPAL+P
Sbjct: 54  FIIRLPTLVLGECACDEEDEDRDRDKALRYKIAAIASILVGGTIGVCIPIIGKKIPALQP 113

Query: 74  EKDIFFIIKAFAAGVILSTGFIHVLPDAFENLTSPCLDKNPWGKFPFTGFVAMVSAIGTL 133
           EK++FF+IKAFAAGVIL+TGFIHVLPDAFE+LTSPCL +NPW  FPFTGFVAM+SAIGTL
Sbjct: 114 EKNVFFVIKAFAAGVILATGFIHVLPDAFESLTSPCLSENPWANFPFTGFVAMLSAIGTL 173

Query: 134 MVD 136
           MVD
Sbjct: 174 MVD 176


>GSVIVT01026252001 assembled CDS
          Length = 348

 Score =  134 bits (337), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/134 (48%), Positives = 88/134 (65%), Gaps = 3/134 (2%)

Query: 26  CTCEPEDEVIDRSLARKYKXXXXXXXXXXXXXXXCLPIAGKFIPALRPEKDIFFIIKAFA 85
           C  E ++   ++S A   K               CLP+  + IPAL P++++F I+KAFA
Sbjct: 30  CQSESQNSCNNKSAALPLKLIAIASILVTSMIGVCLPLFSRSIPALAPDRNLFIIVKAFA 89

Query: 86  AGVILSTGFIHVLPDAFENLTSPCLDKNPWGKFPFTGFVAMVSAIGTLMVDAFATSYYSK 145
           +G+IL+TGF+HVLPD+F+ L SPCL +NPW KFPFTGFVAM+SAI TLMVD+ ATS Y+K
Sbjct: 90  SGIILATGFMHVLPDSFDMLWSPCLKENPWHKFPFTGFVAMLSAIFTLMVDSIATSLYTK 149

Query: 146 SHLKNQQSVSADEE 159
              KN   +  + E
Sbjct: 150 ---KNNTGIIPEIE 160


>GSVIVT01014337001 assembled CDS
          Length = 354

 Score =  115 bits (289), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 56/135 (41%), Positives = 82/135 (60%)

Query: 24  GECTCEPEDEVIDRSLARKYKXXXXXXXXXXXXXXXCLPIAGKFIPALRPEKDIFFIIKA 83
           G    +P+    +++ A K K                 PI  + +P L+P+  +F +IKA
Sbjct: 34  GSKCGDPKGGSEEKASALKLKVIAIFSILIASILGISFPILLQGMPLLKPDGKLFVLIKA 93

Query: 84  FAAGVILSTGFIHVLPDAFENLTSPCLDKNPWGKFPFTGFVAMVSAIGTLMVDAFATSYY 143
           FA+GVIL+TG++HVLPD+ E+LTSPCL + PW KFPF+ F+AMV+A+ TLM+D+FA SYY
Sbjct: 94  FASGVILATGYVHVLPDSIESLTSPCLPQAPWSKFPFSTFIAMVAAVLTLMMDSFAMSYY 153

Query: 144 SKSHLKNQQSVSADE 158
            K  +   +    D 
Sbjct: 154 KKHGMSGAECEYGDH 168


>GSVIVT01026250001 assembled CDS
          Length = 349

 Score =  113 bits (282), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 50/84 (59%), Positives = 67/84 (79%)

Query: 62  PIAGKFIPALRPEKDIFFIIKAFAAGVILSTGFIHVLPDAFENLTSPCLDKNPWGKFPFT 121
           PI  + +P  +P+  +F ++KAFA+GVIL+TG++HVLPD+FE LTSPCL   PW KFPFT
Sbjct: 71  PILLQGMPLFKPDGKVFVLVKAFASGVILATGYVHVLPDSFECLTSPCLPDYPWSKFPFT 130

Query: 122 GFVAMVSAIGTLMVDAFATSYYSK 145
            F+AMV+A+ TLM+D+FA SYY K
Sbjct: 131 TFIAMVAAVLTLMMDSFAMSYYRK 154


>GSVIVT01035402001 assembled CDS
          Length = 353

 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/134 (41%), Positives = 73/134 (54%)

Query: 20  SLAHGECTCEPEDEVIDRSLARKYKXXXXXXXXXXXXXXXCLPIAGKFIPALRPEKDIFF 79
           S+A   C     +   D S A   K                +P+ GK    LR + ++FF
Sbjct: 34  SMATTSCGGTDLETCRDESGALTLKFVAIAAILVAGVSGVAIPLVGKKRRFLRTDGNLFF 93

Query: 80  IIKAFAAGVILSTGFIHVLPDAFENLTSPCLDKNPWGKFPFTGFVAMVSAIGTLMVDAFA 139
             KAFAAGVIL+TGF+H+LPD    L+  CL KNPW KFPF+GF AMVSA+ TL+VD   
Sbjct: 94  AAKAFAAGVILATGFVHMLPDGSTALSDSCLPKNPWSKFPFSGFFAMVSALATLVVDFVG 153

Query: 140 TSYYSKSHLKNQQS 153
           T YY +   + Q +
Sbjct: 154 TQYYERKQERTQAT 167


>GSVIVT01024696001 assembled CDS
          Length = 335

 Score = 69.3 bits (168), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 79  FIIKAFAAGVILSTGFIHVLPDAFENLTSPC--LDKNPWGKFPFTGFVAMVSAIGTLMVD 136
            IIK FAAGVILST  +HVLPDAF  L S C     +PW  FPF+G V M+ AI  L+VD
Sbjct: 60  LIIKCFAAGVILSTSLVHVLPDAFAAL-SDCHVASHHPWKDFPFSGLVTMIGAILALLVD 118

Query: 137 AFATSYYSKSHLKNQQSVSADEE 159
             A+++       +   +   EE
Sbjct: 119 LTASAHVDSHKPSHYTPIGTQEE 141


>GSVIVT01032785001 assembled CDS
          Length = 659

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 6/94 (6%)

Query: 74  EKDIFFIIKAFAAGVILSTGFIHVLPDAFENLTS-PCLDKNPWGKFPFTGFVAMVSAIGT 132
              +   IK  AAGVILS   +HVLP +F++L+    +   PW   PF+G V ++ A+  
Sbjct: 252 HSKLLLAIKCLAAGVILSISLVHVLPRSFDSLSDCQVVSLRPWKDLPFSGIVPIIGAVTA 311

Query: 133 LMVDAFATSYYS--KSH---LKNQQSVSADEEKV 161
           L+VD   + Y +   SH   +K  +  S+D +K 
Sbjct: 312 LLVDIMQSCYGNDKSSHYAPVKTHEDSSSDGKKT 345