Jatropha Genome Database

JcCA0199381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0199381.10 + phase: 0 /pseudo/partial
         (148 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029573001 assembled CDS                                       280   2e-76

>GSVIVT01029573001 assembled CDS
          Length = 396

 Score =  280 bits (716), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 133/146 (91%), Positives = 140/146 (95%)

Query: 1   EWAHKQYIAKHQQGPSQQWGNFYYFRMKNISDIYFIGGFGTVAWVDVKEYEALKPDKIAV 60
           EWAHKQYIAKH QGPSQQWGNFYYFRM+NISDIYFIGGFGTVAWVDVKEYEAL+PDKIAV
Sbjct: 249 EWAHKQYIAKHLQGPSQQWGNFYYFRMQNISDIYFIGGFGTVAWVDVKEYEALQPDKIAV 308

Query: 61  DGGEQNLKELNAIFSKPLKELLSTEAEIDDAALISIDSKGIDIRVRQGAQFNIQRLSFEE 120
           DGGEQNLKELNA+FSKPLKELLS EAEIDDAALISIDSKG DIRVRQGAQFNIQR+ FEE
Sbjct: 309 DGGEQNLKELNAVFSKPLKELLSMEAEIDDAALISIDSKGTDIRVRQGAQFNIQRIPFEE 368

Query: 121 GHAVETLE*AKAALWKLINKG*VHNL 146
           GHAVETLE AKAALWKLIN+G V+N+
Sbjct: 369 GHAVETLEEAKAALWKLINQGRVYNM 394