Jatropha Genome Database

JcCA0194091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0194091.10 - phase: 2 /partial
         (473 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000797001 assembled CDS                                       707   0.0  

>GSVIVT01000797001 assembled CDS
          Length = 498

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/380 (87%), Positives = 360/380 (94%)

Query: 94  RRRVSKDNDPVQLFRKLKREYYHMGTFHGKPSGCLMYDLSHSLRKNTNELLWLACVSLTD 153
           RR ++     +QL RKL REYY+MGTFHGKPSGCLM++L+HSLRKNTNELLWLACVSLTD
Sbjct: 95  RRVLNLGPAALQLLRKLTREYYNMGTFHGKPSGCLMFELAHSLRKNTNELLWLACVSLTD 154

Query: 154 QFVHERLTDERYQAGVMELEQHINSSGNLEAVSVVTLKDGTKIRAPETSRIQYEDEPRLM 213
           QFVHERLTDERYQAGVMELEQHINSSGNL+ ++ VTLKDGTKIRAP++SRI YEDEPRLM
Sbjct: 155 QFVHERLTDERYQAGVMELEQHINSSGNLDTITSVTLKDGTKIRAPDSSRIAYEDEPRLM 214

Query: 214 LLREWNLFDSMLCSSYIAPKLKTWSDNGMKKLKLLLARMGFALVDCQQKFQYMNLEVKRK 273
           LL+EWNLFDSMLCSSYIA KLKTWSDNGMKKLKLLLARMGFALVDCQQKFQYMNLEVKRK
Sbjct: 215 LLQEWNLFDSMLCSSYIATKLKTWSDNGMKKLKLLLARMGFALVDCQQKFQYMNLEVKRK 274

Query: 274 MKDEFERFLPEYGLTDFYYRSFLRLHGYSSRVSAADVVYGVTALLESFVNSDGSCASKQF 333
           MKDEFERFLPEYGLTDFYYRSFLRLHGYSSRVSAADVVYGVTALLESFV SDGS ASKQF
Sbjct: 275 MKDEFERFLPEYGLTDFYYRSFLRLHGYSSRVSAADVVYGVTALLESFVKSDGSSASKQF 334

Query: 334 GVAYDALSLNNLDKLKIGMQQAIKVQRAILRQGSTAITKSGSVRSGRKFRWVKLEDSVDT 393
           GVA+DALSL+NLDKL+ GMQ AI++QRAILRQGS AITKSG++RSGRKFRWVKLEDS DT
Sbjct: 335 GVAFDALSLSNLDKLRNGMQYAIRIQRAILRQGSAAITKSGAIRSGRKFRWVKLEDSADT 394

Query: 394 KLLGYPQALTKFCYFIMDALREKGARAKPLVCACLSQEPNKMLIVGVCGKPRLGAVQGNA 453
           KLLGYPQALTKFCYF+MDALREKGA+ KPL+CACLSQEPNK+LIVGVCGKPRLGAVQGNA
Sbjct: 395 KLLGYPQALTKFCYFLMDALREKGAKMKPLLCACLSQEPNKVLIVGVCGKPRLGAVQGNA 454

Query: 454 FGVAFRNAAEEIGAEVFHEL 473
           FG+AFRNAAEEIGA+ FHEL
Sbjct: 455 FGIAFRNAAEEIGADFFHEL 474