Jatropha Genome Database
- JcCA0193141.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0193141.20 - phase: 2 /pseudo/partial
(94 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01008498001 assembled CDS 84 1e-17
GSVIVT01001826001 assembled CDS 82 5e-17
GSVIVT01010358001 assembled CDS 80 2e-16
GSVIVT01008694001 assembled CDS 80 2e-16
GSVIVT01001827001 assembled CDS 79 4e-16
GSVIVT01008693001 assembled CDS 68 1e-12
GSVIVT01029182001 assembled CDS 67 1e-12
GSVIVT01031500001 assembled CDS 67 1e-12
GSVIVT01033646001 assembled CDS 66 4e-12
GSVIVT01011541001 assembled CDS 66 4e-12
GSVIVT01029183001 assembled CDS 65 8e-12
GSVIVT01016171001 assembled CDS 61 1e-10
GSVIVT01024400001 assembled CDS 59 5e-10
GSVIVT01010497001 assembled CDS 51 1e-07
>GSVIVT01008498001 assembled CDS
Length = 523
Score = 84.3 bits (207), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/53 (66%), Positives = 47/53 (88%)
Query: 20 YPNEEAGQVPVAFVVRQHGRRINESQIKDFIAQQVAPYKRIRRVIFVDSLPKN 72
YP+EEAGQ+P+AFVVR+ G I E+Q+ +FIA+QVAPYK+IRRV FV+S+PK+
Sbjct: 451 YPDEEAGQIPMAFVVRKPGSSITEAQVMEFIAKQVAPYKKIRRVAFVNSIPKS 503
>GSVIVT01001826001 assembled CDS
Length = 565
Score = 82.0 bits (201), Expect = 5e-17, Method: Composition-based stats.
Identities = 35/54 (64%), Positives = 48/54 (88%)
Query: 20 YPNEEAGQVPVAFVVRQHGRRINESQIKDFIAQQVAPYKRIRRVIFVDSLPKNA 73
YP++EAGQVP+AF+VR+ +++E+Q+ DFIA+QVAPYK+IRRV FV S+PKNA
Sbjct: 491 YPDDEAGQVPMAFIVRRPESKLDEAQVMDFIAKQVAPYKKIRRVSFVTSIPKNA 544
>GSVIVT01010358001 assembled CDS
Length = 550
Score = 80.5 bits (197), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/54 (64%), Positives = 47/54 (87%)
Query: 20 YPNEEAGQVPVAFVVRQHGRRINESQIKDFIAQQVAPYKRIRRVIFVDSLPKNA 73
YP+ +AGQVP+AFVV++ I+ES+I DFIA+QVAPYK+IRRV F++S+PKNA
Sbjct: 475 YPDAQAGQVPMAFVVKRPQSTIDESEIMDFIAKQVAPYKKIRRVSFINSIPKNA 528
>GSVIVT01008694001 assembled CDS
Length = 647
Score = 80.1 bits (196), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/54 (61%), Positives = 45/54 (83%)
Query: 20 YPNEEAGQVPVAFVVRQHGRRINESQIKDFIAQQVAPYKRIRRVIFVDSLPKNA 73
+P++E GQ P+A++ R+ G ++ES + DFIA+QVAPYKRIRRV FVDS+PKNA
Sbjct: 577 FPDKEVGQYPMAYINRKAGSNLSESAVMDFIAKQVAPYKRIRRVAFVDSIPKNA 630
>GSVIVT01001827001 assembled CDS
Length = 513
Score = 79.3 bits (194), Expect = 4e-16, Method: Composition-based stats.
Identities = 33/53 (62%), Positives = 46/53 (86%)
Query: 20 YPNEEAGQVPVAFVVRQHGRRINESQIKDFIAQQVAPYKRIRRVIFVDSLPKN 72
YP+EEAG+VP+A+VVR+ +NE+Q+ DFIA+QVA YK+IRRV+FV S+PK+
Sbjct: 439 YPDEEAGEVPMAYVVRRPQSSLNEAQVMDFIAKQVAAYKKIRRVLFVSSIPKS 491
>GSVIVT01008693001 assembled CDS
Length = 516
Score = 67.8 bits (164), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/52 (53%), Positives = 41/52 (78%)
Query: 20 YPNEEAGQVPVAFVVRQHGRRINESQIKDFIAQQVAPYKRIRRVIFVDSLPK 71
+P++E GQ P+A++ R+ G ++E + DFI++QVAPYKRIRRV FV S+PK
Sbjct: 446 FPDKEVGQYPMAYIHRKAGSCLSEDAVMDFISKQVAPYKRIRRVAFVASIPK 497
>GSVIVT01029182001 assembled CDS
Length = 525
Score = 67.4 bits (163), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/53 (54%), Positives = 43/53 (81%), Gaps = 1/53 (1%)
Query: 22 NEEAGQVPVAFVVRQHGRRINESQIKDFIAQQVAPYKRIRRVIFVDSLPKNAP 74
+E AG+VP+AF+VR +G I E +IK++IA+QV YKRI+RV F++++PK AP
Sbjct: 455 DEAAGEVPIAFIVRSNGFEITEDEIKEYIAKQVVYYKRIKRVFFIETIPK-AP 506
>GSVIVT01031500001 assembled CDS
Length = 221
Score = 67.0 bits (162), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 42/54 (77%)
Query: 20 YPNEEAGQVPVAFVVRQHGRRINESQIKDFIAQQVAPYKRIRRVIFVDSLPKNA 73
+P+ EAG+VP+A+VVR + E +K FIA QVAP+K++RRV F++++PK+A
Sbjct: 151 FPDAEAGEVPIAYVVRSPNSSLTEEDVKTFIANQVAPFKKLRRVSFINTVPKSA 204
>GSVIVT01033646001 assembled CDS
Length = 649
Score = 65.9 bits (159), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 42/53 (79%)
Query: 21 PNEEAGQVPVAFVVRQHGRRINESQIKDFIAQQVAPYKRIRRVIFVDSLPKNA 73
P+ EAG+VP+A+VVR + E ++ FIA+QVAP+KR+RRV F++++PK+A
Sbjct: 580 PDVEAGEVPIAYVVRSPRSSLTEEDVQKFIAKQVAPFKRLRRVTFINNVPKSA 632
>GSVIVT01011541001 assembled CDS
Length = 571
Score = 65.9 bits (159), Expect = 4e-12, Method: Composition-based stats.
Identities = 26/52 (50%), Positives = 43/52 (82%)
Query: 22 NEEAGQVPVAFVVRQHGRRINESQIKDFIAQQVAPYKRIRRVIFVDSLPKNA 73
+EEAG+VPVAFVV++ G ++++ I +++ +QVAPYK++R+VIF +PK+A
Sbjct: 502 DEEAGEVPVAFVVKRPGSALSQAAIINYVEKQVAPYKKVRKVIFTHPIPKSA 553
>GSVIVT01029183001 assembled CDS
Length = 231
Score = 64.7 bits (156), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 40/50 (80%)
Query: 22 NEEAGQVPVAFVVRQHGRRINESQIKDFIAQQVAPYKRIRRVIFVDSLPK 71
+E AG+VPVAF+VR +G +I E +IK +I++QV YKRI RV FV+++PK
Sbjct: 161 DEAAGEVPVAFIVRSNGSKITEDEIKQYISKQVVFYKRIYRVFFVETIPK 210
>GSVIVT01016171001 assembled CDS
Length = 448
Score = 60.8 bits (146), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 40/51 (78%)
Query: 22 NEEAGQVPVAFVVRQHGRRINESQIKDFIAQQVAPYKRIRRVIFVDSLPKN 72
+E AGQ+P+A+VVR G + + ++ F+A QVAPYK++R+V F++++P++
Sbjct: 376 DEAAGQIPMAYVVRAGGSELTQQEVIQFVAGQVAPYKKVRKVGFINAIPRS 426
>GSVIVT01024400001 assembled CDS
Length = 512
Score = 58.5 bits (140), Expect = 5e-10, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 39/51 (76%)
Query: 22 NEEAGQVPVAFVVRQHGRRINESQIKDFIAQQVAPYKRIRRVIFVDSLPKN 72
++ AG+VPVAFVVR +G + E +K+FI++QV YKR+ +V FV ++PK+
Sbjct: 440 DDVAGEVPVAFVVRSNGFELTEEAVKEFISKQVVFYKRLHKVYFVHAIPKS 490
>GSVIVT01010497001 assembled CDS
Length = 555
Score = 50.8 bits (120), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 21 PNEEAGQVPVAFVVRQHGRRINESQIKDFIAQQVAPYKRIRRVIFVDSLPKN 72
P+EEAG++P A VV + E +I ++A VA YKR+R V FV+++PK+
Sbjct: 475 PDEEAGEIPAACVVLNPEAKETEEEIVKYVASNVAQYKRVRVVHFVETIPKS 526