Jatropha Genome Database

JcCA0192731.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0192731.20 + phase: 0 /partial
         (209 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022227001 assembled CDS                                       179   8e-46
GSVIVT01010443001 assembled CDS                                        75   2e-14
GSVIVT01026912001 assembled CDS                                        74   3e-14
GSVIVT01021505001 assembled CDS                                        68   3e-12
GSVIVT01025417001 assembled CDS                                        65   2e-11
GSVIVT01015512001 assembled CDS                                        61   3e-10
GSVIVT01008973001 assembled CDS                                        57   4e-09
GSVIVT01029760001 assembled CDS                                        55   3e-08
GSVIVT01030561001 assembled CDS                                        47   9e-06

>GSVIVT01022227001 assembled CDS
          Length = 344

 Score =  179 bits (454), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 95/191 (49%), Positives = 119/191 (62%), Gaps = 9/191 (4%)

Query: 15  LIPSLPNDIALNILARLPRSHHPLLSLVSKPFRSVFSSALFYTTRSLLLCSQPFLYVSIR 74
           LIP+LP+D+AL  +AR+PRS HP L LV K +RS+ +S  F++TRSLL C Q  LY+ +R
Sbjct: 22  LIPNLPDDVALQCIARVPRSRHPHLLLVCKSWRSILNSPDFFSTRSLLNCMQHSLYLIVR 81

Query: 75  IPTTSSLHWFTLFQNSPNXXXXXXXXXXXXXXXXXXXGSALVAVGPKIYVIGGCLKDIPS 134
           +  T  L WF L QN                      GSA  A+G KI+V+GG + D+ S
Sbjct: 82  VNCT--LKWFVLNQNP-------RILASLPPNPSPAIGSAFAAIGSKIFVLGGSVNDVAS 132

Query: 135 SHVWTLDCRFHSWESFPNMSISREFAAAGVVDGKIYVIGGCVVDTWARSKNWAEVFDPKI 194
             V   DCRF +WE  P M + REFAAAGVV  KIYV+GGC+VDTWA+S NWAEVFDP  
Sbjct: 133 PTVQVFDCRFGTWELGPRMRVGREFAAAGVVGRKIYVMGGCLVDTWAKSANWAEVFDPAA 192

Query: 195 RTWESVDSARE 205
             W  V+S  E
Sbjct: 193 GRWAGVESPVE 203


>GSVIVT01010443001 assembled CDS
          Length = 385

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 85/202 (42%), Gaps = 13/202 (6%)

Query: 7   ASQEPAPILIPSLPNDIALNILARLPRSHHPLLSLVSKPFRSVFSSALFYTTRSLLLCSQ 66
           A     PIL P LP+D+A   LA +PRS+ P +  VSK +RS   S  F T R L    +
Sbjct: 41  ADDSYGPIL-PGLPDDVAKYCLALVPRSNFPAMGGVSKKWRSFIRSKEFITVRKLAGMLE 99

Query: 67  PFLYVSIRIPTTSSLHWFTLFQNSPNXXXXXXXXXXXXXXXXXXXGSALVAVGPKIYVIG 126
            +LYV          HW  L                         G  +V +  K+ V+ 
Sbjct: 100 EWLYVLTMDAEGKGSHWEVL------DCLGHKHQLLPPMPGPVKTGFEVVVLNGKLLVMA 153

Query: 127 GC----LKDIPSSHVWTLDCRFHSWESFPNMSISREFAAAGVVDGKIYVIGGCVVDTWAR 182
           GC         S+ V+  D   +SW    NM+++R   A   V+G +Y +GG   D    
Sbjct: 154 GCSVVGRTGSASADVYQYDSCLNSWSKLANMNVARYDFACAEVNGMVYAVGGYGAD--GD 211

Query: 183 SKNWAEVFDPKIRTWESVDSAR 204
           S + AE++D     W  ++S R
Sbjct: 212 SLSSAEMYDADADKWILIESLR 233


>GSVIVT01026912001 assembled CDS
          Length = 359

 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 93/198 (46%), Gaps = 30/198 (15%)

Query: 15  LIPSLPNDIALNILARLPRSHHPLLSLVSKPFRSVFSSALFYTTRSLLLCSQPFLYVSIR 74
           LI  LP+DIAL  LAR+PR +H LL  VS+ +R + SS  ++  R      +P++Y   R
Sbjct: 21  LICGLPDDIALICLARVPRKYHTLLKCVSRRWRDLVSSEEWHAYRQKHKLDEPWIYALCR 80

Query: 75  I-----------PTTSSLHWFTLFQNSPNXXXXXXXXXXXXXXXXXXXGSALVAVGPKIY 123
                       P ++   W  L +  P                    G +   +G K+Y
Sbjct: 81  DKFERVCCYVLDPYSTRRSW-KLIEGFP-------------PRSLKRKGMSFEVLGKKVY 126

Query: 124 VIGGC--LKDIPSSHVWTLDCRFHSWESFPNMSISREFAAAGVVDGKIYVIGGCVVDTWA 181
           ++GGC  L+D  +  V++ D   + W     +S +R + A  V++GKIY IGG  + + +
Sbjct: 127 LLGGCGWLED-ATDEVYSYDASTNRWSEAAPLSTARCYFACEVLNGKIYAIGG--LGSKS 183

Query: 182 RSKNWAEVFDPKIRTWES 199
              +  + ++P   +W+S
Sbjct: 184 NDPHSWDTYNPHTNSWKS 201


>GSVIVT01021505001 assembled CDS
          Length = 429

 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 82/198 (41%), Gaps = 10/198 (5%)

Query: 15  LIPSLPNDIALNILARLPRSHHPLLSLVSKPFRSVFSS-ALFYTTRSLLLCSQPFLYVSI 73
           LIP LP+DIALN L RLP   H     V K +  +  +   F+T R  L    P+L+V  
Sbjct: 62  LIPGLPDDIALNCLLRLPVQSHAACRAVCKRWHLLLGNKERFFTRRKELGFQDPWLFVFA 121

Query: 74  RIPTTSSLHWFTLFQNSPNXXXXXXXXXXXXXXXXXXXGSALVAVGPK--IYVIGGCLKD 131
               T  + W  L     N                   G   V++  +  ++V GG + D
Sbjct: 122 FHKCTGKIQWQVL---DLNHFSWHTIPAMPCKDKVCPHGFRCVSIPHEGALFVCGGMVSD 178

Query: 132 I--PSSHVWTLDCRFHSWESFPNMSISREFAAAGVVDGKIYVIGGCVVDTWARSKNWAEV 189
           +  P   V   + + + W     M  +R F A GV+DG IY  GG   D +    + AEV
Sbjct: 179 VDCPLDLVLKYEMQKNRWTVMSQMITARSFFATGVIDGMIYAAGGNSSDLF--ELDLAEV 236

Query: 190 FDPKIRTWESVDSARENI 207
            DP    W  + S   N+
Sbjct: 237 LDPVKGIWSPIASMGTNM 254


>GSVIVT01025417001 assembled CDS
          Length = 412

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 85/194 (43%), Gaps = 22/194 (11%)

Query: 13  PILIPSLPNDIALNILARLPRSHHPLLSLVSKPFRSVFSSALFYTTRSLLLCSQPFLYVS 72
           P L+P LP+D+A+  L R+PR  H  L LV K +  + S   FY+ R  L  ++ ++YV 
Sbjct: 75  PPLLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWHRLLSGNFFYSLRKSLGMAEEWVYV- 133

Query: 73  IRIPTTSSLHW------FTLFQNSPNXXXXXXXXXXXXXXXXXXXGSALVAVGPKIYVIG 126
           I+      + W      + L+Q  P                    G A+++ G  +Y+ G
Sbjct: 134 IKRDRDGRISWHAFDPTYQLWQPLP--------PVPVEYSEALGFGCAVLS-GCNLYLFG 184

Query: 127 GCLKDIPS---SHVWTLDCRFHSWESFPNMSISREFAAAGVVDGKIYVIGGCVVDTWARS 183
           G  KD        V     R + W   P+M   R F  + V++  +YV GG   +   R+
Sbjct: 185 G--KDPMKRSLRRVIFYSARTNKWHRAPDMLRKRHFFGSCVINNCLYVAGG-ECEGIQRT 241

Query: 184 KNWAEVFDPKIRTW 197
              AEV+DP    W
Sbjct: 242 LRSAEVYDPNRNRW 255


>GSVIVT01015512001 assembled CDS
          Length = 398

 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 87/201 (43%), Gaps = 25/201 (12%)

Query: 6   SASQEPAPILIPSLPNDIALNILARLPRSHHPLLSLVSKPFRSVFSSALFYTTRSLLLCS 65
           S SQ P   L+P LP+D+A+  L R+PR  H  L LV K +  +     +Y+ R  L  +
Sbjct: 61  SRSQSP---LLPGLPDDLAIACLIRVPRIEHRKLRLVCKRWYRLLVGNFYYSLRKNLGIA 117

Query: 66  QPFLYVSIRIPTTSSLHW------FTLFQNSPNXXXXXXXXXXXXXXXXXXXGSALVAVG 119
           + ++YV I+      + W      + L+Q  P                    G A+++ G
Sbjct: 118 EEWIYV-IKRDREGKISWHAFDPIYQLWQPLP--------PVPKEYSEALGFGCAVLS-G 167

Query: 120 PKIYVIGGCLKDIPSS---HVWTLDCRFHSWESFPNMSISREFAAAGVVDGKIYVIGGCV 176
             +Y+ GG  KD        V     R + W   P+M   R F  + V++  +YV GG  
Sbjct: 168 CHLYLFGG--KDPLKGSMRRVIFYSARTNKWHRAPDMLRRRHFFGSCVINNCLYVAGG-E 224

Query: 177 VDTWARSKNWAEVFDPKIRTW 197
            +   RS   AEV+DP    W
Sbjct: 225 NEGMHRSLRSAEVYDPNRNRW 245


>GSVIVT01008973001 assembled CDS
          Length = 274

 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 18/175 (10%)

Query: 5   TSASQEPAPILIPSLPNDIALNILARLPRSHHPLLSLVSKPFRSVFSSALFYTTRSLLLC 64
           +S+  E  P LIPSLP++I++ ILARLPR  +  L LVS+ +++  +S   +  R  L  
Sbjct: 32  SSSFNEENPRLIPSLPDEISILILARLPRICYFDLRLVSRNWKATITSPELFNLRKELGK 91

Query: 65  SQPFLYVSIRIPTTSSLHWFTL------FQNSPNXXXXXXXXXXXXXXXXXXXGSALVAV 118
           ++ +LY+  ++     L W  L      +Q  P+                   G A+ AV
Sbjct: 92  TEEWLYILTKV-EEDRLLWHALDPLSRRWQRLPS-------MPNDTLDQMPFCGCAIGAV 143

Query: 119 GPKIYVIGGCLKDIPSSHVWTLDCRFHSWESFPNMSISREFA----AAGVVDGKI 169
              +YV+GG         VW  D   ++W     MS  R +     A  VV GK+
Sbjct: 144 DGCLYVLGGFSSASTMRCVWRFDPILNAWSEVTPMSTGRAYCKTEDAWKVVIGKV 198


>GSVIVT01029760001 assembled CDS
          Length = 404

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 83/201 (41%), Gaps = 42/201 (20%)

Query: 4   TTSASQEPAPI-LIPSLPNDIALNILARLPRSHHPLLSLVSKPFRSVFSSALFYTTRSLL 62
           ++S S+E   + LIP+LP++I+  ILAR+PR  +  + LVS+ ++           R   
Sbjct: 32  SSSISEENENVRLIPNLPDEISFQILARVPRIFYLNVRLVSRSWKGAI-------MRDGK 84

Query: 63  LCSQPFLYVSIRIPTTSSLHWFTLFQNSPNXXXXXXXXXXXXXXXXXXXGSALVAVGPKI 122
            C Q  +    RIP                                   GSA+  V   +
Sbjct: 85  DCHQCLMDELDRIPFC---------------------------------GSAIGTVDGCL 111

Query: 123 YVIGGCLKDIPSSHVWTLDCRFHSWESFPNMSISREFAAAGVVDGKIYVIGGCVVDTWAR 182
           YV+GG  +    + VW  D   + W     MSI R +   GV++ K+YV+GG        
Sbjct: 112 YVLGGFSRASALTSVWRYDPVQNGWSEVSPMSIGRAYCKTGVLNNKLYVVGGVTRGRGGL 171

Query: 183 -SKNWAEVFDPKIRTWESVDS 202
                AEVFDP+   W  + S
Sbjct: 172 IPLQSAEVFDPRTGVWSQIPS 192


>GSVIVT01030561001 assembled CDS
          Length = 369

 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 57/138 (41%), Gaps = 16/138 (11%)

Query: 76  PTTSSLHWFTLFQNSPNXXXXXXXXXXXXXXXXXXXGSALVAVGPKIYVIGG--C----- 128
           PTT+  +W   + N  N                   G ++V++G  IY+IGG  C     
Sbjct: 35  PTTNMSNWIECY-NPSNNAWHRVTFIPLRLENHIMKGFSMVSIGASIYIIGGRLCHKVAG 93

Query: 129 --LKDIPS------SHVWTLDCRFHSWESFPNMSISREFAAAGVVDGKIYVIGGCVVDTW 180
             L DI        S V   D + ++W    ++   R   A  V D KIYV GG      
Sbjct: 94  RELDDIVEVDREVLSSVLRYDVKTNAWSECASLCTPRFDFACTVCDRKIYVAGGQCTLGS 153

Query: 181 ARSKNWAEVFDPKIRTWE 198
           AR  + AEV+DP +  W+
Sbjct: 154 ARGISAAEVYDPALDEWK 171