Jatropha Genome Database

JcCA0192231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0192231.10 + phase: 0 /partial/short
         (45 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034268001 assembled CDS                                        59   6e-10
GSVIVT01009035001 assembled CDS                                        51   8e-08
GSVIVT01020581001 assembled CDS                                        49   4e-07
GSVIVT01004854001 assembled CDS                                        49   4e-07

>GSVIVT01034268001 assembled CDS
          Length = 285

 Score = 58.5 bits (140), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 31/45 (68%)

Query: 1   VMQNQEAVDLVKPIKDPQXXXXXXXXXXXXXKSKDDISCIVIRFG 45
           VM+NQEAVD+VK IKDPQ             KSKDDISCIVIRFG
Sbjct: 241 VMKNQEAVDMVKSIKDPQVAAKRLTTEALERKSKDDISCIVIRFG 285


>GSVIVT01009035001 assembled CDS
          Length = 283

 Score = 51.2 bits (121), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/44 (52%), Positives = 28/44 (63%)

Query: 1   VMQNQEAVDLVKPIKDPQXXXXXXXXXXXXXKSKDDISCIVIRF 44
           VM NQEAVD+V+ IKDP+              SKDDISC+V+RF
Sbjct: 238 VMNNQEAVDIVRRIKDPEKAAKQLTAEALRRDSKDDISCVVVRF 281


>GSVIVT01020581001 assembled CDS
          Length = 283

 Score = 49.3 bits (116), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/44 (54%), Positives = 27/44 (61%)

Query: 1   VMQNQEAVDLVKPIKDPQXXXXXXXXXXXXXKSKDDISCIVIRF 44
           VM NQEAVD +K IKD Q             KSKDDISCIV++F
Sbjct: 239 VMSNQEAVDCIKHIKDAQSAAKRLTDEALSKKSKDDISCIVVKF 282


>GSVIVT01004854001 assembled CDS
          Length = 838

 Score = 48.9 bits (115), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 28/44 (63%)

Query: 1   VMQNQEAVDLVKPIKDPQXXXXXXXXXXXXXKSKDDISCIVIRF 44
           VM NQEAVD+ + IKDPQ             +SKDDISC+V+RF
Sbjct: 793 VMDNQEAVDIARKIKDPQKAAKHLTAEALRRESKDDISCVVVRF 836