Jatropha Genome Database

JcCA0172201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0172201.10 - phase: 0 /partial
         (163 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008197001 assembled CDS                                       271   8e-74
GSVIVT01033770001 assembled CDS                                       197   2e-51
GSVIVT01018517001 assembled CDS                                       196   3e-51
GSVIVT01024818001 assembled CDS                                       174   2e-44
GSVIVT01015129001 assembled CDS                                        70   3e-13

>GSVIVT01008197001 assembled CDS
          Length = 498

 Score =  271 bits (694), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 131/140 (93%), Positives = 135/140 (96%)

Query: 7   TRNQDDVDAIMLDIDGTPNKSKLGANAILGVSLSICRAGAGAKGLPLYKHIQELSGTKEL 66
            RNQ +VDAIML+ DGTPNKSKLGANA LGVSLS+CRAGAGAKG+PLYKHIQELSGTKEL
Sbjct: 104 VRNQAEVDAIMLEFDGTPNKSKLGANATLGVSLSVCRAGAGAKGVPLYKHIQELSGTKEL 163

Query: 67  VMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHTLKGIIKAKYGQD 126
           VMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHTLKGIIKAKYGQD
Sbjct: 164 VMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHTLKGIIKAKYGQD 223

Query: 127 ACNVGDEGGFAPNVQDNRGG 146
           ACNVGDEGGFAPNVQDNR G
Sbjct: 224 ACNVGDEGGFAPNVQDNREG 243


>GSVIVT01033770001 assembled CDS
          Length = 444

 Score =  197 bits (500), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/144 (66%), Positives = 114/144 (79%), Gaps = 6/144 (4%)

Query: 9   NQDDVDAIMLD-IDGTPN-----KSKLGANAILGVSLSICRAGAGAKGLPLYKHIQELSG 62
           +Q  +D  M+  +DGT N     K KLGANAIL VSL++C+AGA  K +PLYKHI  ++G
Sbjct: 85  DQTGIDNFMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAIVKNIPLYKHIANIAG 144

Query: 63  TKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHTLKGIIKAK 122
            K LV+PVPAFNVINGGSHAGN LAMQEFMILP+GA SF EA++MG EVYH LK +IK K
Sbjct: 145 NKHLVLPVPAFNVINGGSHAGNKLAMQEFMILPIGAPSFKEAMKMGVEVYHHLKAVIKKK 204

Query: 123 YGQDACNVGDEGGFAPNVQDNRGG 146
           YGQDA NVGDEGGFAPN+Q+N+ G
Sbjct: 205 YGQDATNVGDEGGFAPNIQENKEG 228


>GSVIVT01018517001 assembled CDS
          Length = 445

 Score =  196 bits (499), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 96/143 (67%), Positives = 114/143 (79%), Gaps = 6/143 (4%)

Query: 10  QDDVDAIMLD-IDGTPN-----KSKLGANAILGVSLSICRAGAGAKGLPLYKHIQELSGT 63
           Q  +D  M+  +DGT N     K KLGANAIL VSL++C+AGA    +PLYKHI  L+G 
Sbjct: 86  QVKIDNFMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAMVNKIPLYKHIANLAGN 145

Query: 64  KELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHTLKGIIKAKY 123
           K+LV+PVPAFNVINGGSHAGN LAMQEFMILP+GA+SF EA++MG EVYH LK +IK KY
Sbjct: 146 KKLVLPVPAFNVINGGSHAGNKLAMQEFMILPLGASSFKEAMKMGVEVYHHLKSVIKKKY 205

Query: 124 GQDACNVGDEGGFAPNVQDNRGG 146
           GQDA NVGDEGGFAPN+Q+N+ G
Sbjct: 206 GQDATNVGDEGGFAPNIQENKEG 228


>GSVIVT01024818001 assembled CDS
          Length = 485

 Score =  174 bits (441), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 82/151 (54%), Positives = 104/151 (68%), Gaps = 13/151 (8%)

Query: 10  QDDVDAIMLDIDGTPNKSKLGANAILGVSLSICRAGAGAKGLPLYKHIQELSGTKELVMP 69
           Q  +D +M+D+D T  K +LGANAIL VS++ C+AGA  K +PLYKHI +LSG   L +P
Sbjct: 129 QSQIDQVMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLSGQSNLFLP 188

Query: 70  VPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHTLKGIIKAKYGQDACN 129
           VPAF VI+GG HAGN LA QE MILP+GAT F EAL+MG+E YH LK +I  KYG   C+
Sbjct: 189 VPAFTVISGGKHAGNTLAAQEIMILPIGATRFEEALQMGAETYHHLKAVITEKYGAHGCH 248

Query: 130 VGDEGGFAPNVQDNRGGTCFAHRRNREGWLH 160
           VG++GG APN+             +R+ WLH
Sbjct: 249 VGEDGGLAPNI-------------SRQVWLH 266


>GSVIVT01015129001 assembled CDS
          Length = 74

 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 30/48 (62%), Positives = 37/48 (77%)

Query: 93  ILPVGATSFAEALRMGSEVYHTLKGIIKAKYGQDACNVGDEGGFAPNV 140
           ILP+GAT F EAL+MGSE YH LK +I  KYG   C+VG++GG APN+
Sbjct: 10  ILPIGATRFEEALQMGSETYHHLKAVITEKYGAHGCDVGEDGGLAPNI 57