Jatropha Genome Database

JcCA0163731.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0163731.20 - phase: 2 /TE/partial
         (608 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031724001 assembled CDS                                        98   1e-20
GSVIVT01000641001 assembled CDS                                        76   5e-14
GSVIVT01011334001 assembled CDS                                        66   5e-11
GSVIVT01012382001 assembled CDS                                        65   8e-11
GSVIVT01013655001 assembled CDS                                        60   4e-09
GSVIVT01013341001 assembled CDS                                        56   6e-08
GSVIVT01018138001 assembled CDS                                        54   2e-07
GSVIVT01010555001 assembled CDS                                        49   9e-06

>GSVIVT01031724001 assembled CDS
          Length = 1135

 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 85/174 (48%)

Query: 365  YALELLAETSFLASKPCSTPIDSNVKLSATTGTPLFDISSYRKLIGKLIHLTTTRPDLTS 424
            Y  +LL       SK  ++P+     LS   GT   D + YR L+G L + T TRPD+  
Sbjct: 950  YICDLLQRAGLSESKLVTSPMAVGHVLSIADGTRFEDPTLYRSLVGALQYCTITRPDIAY 1009

Query: 425  VVNQLSQILSASTSAHQLALHIVLRYIKQAPGLGLLFPXXXXIQLKAFSNSNGARCLDTR 484
             +N+  Q + A TS H  A+  VLRY+K +   GL F     + L A+++++GA C D R
Sbjct: 1010 TINKFFQFMHAPTSTHLQAVKRVLRYLKGSLFYGLSFQPSSSLDLIAYTDADGASCPDDR 1069

Query: 485  RMVIGYGVYLGDSLXXXXXXXXXXXXXXXXEAEYRALTTTTCEIQWLSYLLNDL 538
            R   GY ++   +L                E++YR L   T E+ W+  LL +L
Sbjct: 1070 RSTNGYCIFFRGNLISWSASKQKVVSRSSIESKYRGLANATIELTWIQSLLKEL 1123


>GSVIVT01000641001 assembled CDS
          Length = 947

 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 70/154 (45%)

Query: 387 SNVKLSATTGTPLFDISSYRKLIGKLIHLTTTRPDLTSVVNQLSQILSASTSAHQLALHI 446
           S +KL+   G    D   Y++++G L++LT TRPD+   V+ +S+ +   T  H LA   
Sbjct: 218 SYLKLNKDHGGKKVDSIIYKQIVGSLMYLTATRPDIMHSVSLISRYMENPTELHFLAAKK 277

Query: 447 VLRYIKQAPGLGLLFPXXXXIQLKAFSNSNGARCLDTRRMVIGYGVYLGDSLXXXXXXXX 506
           + RY++     GL +       L  F++S+ A   D RR   GY   LG           
Sbjct: 278 ICRYLQGTKDFGLFYKKGKRSDLIGFTDSDYAGDQDNRRSTSGYVFMLGTGAVSWSSKKQ 337

Query: 507 XXXXXXXXEAEYRALTTTTCEIQWLSYLLNDLKI 540
                   EAE+ A T   C+  WL  +L +L +
Sbjct: 338 PIVTLSTTEAEFVAATVCACQAIWLRKILEELHL 371


>GSVIVT01011334001 assembled CDS
          Length = 640

 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 1/93 (1%)

Query: 285 GYTQSPSDHSLCTLHKFHSFTTLLI-YVDDVILVGNDLLKIQRVKXLLDGLFKIKDLGPL 343
           GY+   SDH+L   H     T ++I YV D+IL  +   +I ++K +    F+IKDLG L
Sbjct: 22  GYSWCHSDHTLFVKHTVKGRTAIIIVYVGDIILTKDHEEEIGKLKSIFAHEFEIKDLGNL 81

Query: 344 RFFLVLEIAQSPQGITLCQRKYALELLAETSFL 376
           ++F  +EI +S  GI + Q KY L+LL E   L
Sbjct: 82  KYFFGMEITRSNMGIVVSQCKYVLDLLTEIEML 114


>GSVIVT01012382001 assembled CDS
          Length = 952

 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 55/113 (48%)

Query: 426 VNQLSQILSASTSAHQLALHIVLRYIKQAPGLGLLFPXXXXIQLKAFSNSNGARCLDTRR 485
           V+ +SQ + A T  H   +  +LRY+K+  G G++        +  FS+S+ A     RR
Sbjct: 751 VSLVSQYMHAPTVVHLCMVKRILRYLKKTIGRGIVMRRNGHTDIIGFSDSDWAGNTIDRR 810

Query: 486 MVIGYGVYLGDSLXXXXXXXXXXXXXXXXEAEYRALTTTTCEIQWLSYLLNDL 538
              GY +++G +L                EAEYRA+   +CE+ WL  LL DL
Sbjct: 811 STTGYCMFVGGNLVSWKSKKQPVVARSSAEAEYRAMAAASCEMVWLKNLLTDL 863


>GSVIVT01013655001 assembled CDS
          Length = 4396

 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 56/120 (46%)

Query: 425  VVNQLSQILSASTSAHQLALHIVLRYIKQAPGLGLLFPXXXXIQLKAFSNSNGARCLDTR 484
             +N+LSQ +   TS H  A+  +LRY+      G+       + L AFS+S+ A   D  
Sbjct: 4254 TMNKLSQFMHQPTSDHWNAVKRLLRYLCGTLDHGITLRRTSPLALHAFSDSDWAGNKDDF 4313

Query: 485  RMVIGYGVYLGDSLXXXXXXXXXXXXXXXXEAEYRALTTTTCEIQWLSYLLNDLKIDHPQ 544
                 Y +YLG +                 EAEYR++ +T  EI+W+  LL +L +  PQ
Sbjct: 4314 TSTSAYIIYLGHNPISWSSKKQRTVARSSTEAEYRSVASTAAEIRWICSLLTELGVTLPQ 4373


>GSVIVT01013341001 assembled CDS
          Length = 503

 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 1/107 (0%)

Query: 438 SAHQLALHIVLRYIKQAPGLGLLFPXXXXIQLKAFSNSNGARCLDTRRMVIGYGVYLGDS 497
            AH   ++ +L+Y+K  P  GL F      +++AF++++ A  ++ RR   GY  ++  +
Sbjct: 6   EAHMNVVYKILQYLKGTPRKGLHFGKHDQFKIEAFTDADWAGSIEDRRSTSGYCTFVFGN 65

Query: 498 LXXXXXXXXXXXXXXXXEAEYRALTTTTCEIQWLSYLLNDLKID-HP 543
           L                E ++R++    CE+ W+  +L +LKI  HP
Sbjct: 66  LITWRSKKQNVVARSSAEVKFRSIAHGICEVLWIKRVLEELKITIHP 112


>GSVIVT01018138001 assembled CDS
          Length = 98

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 51/91 (56%)

Query: 275 LKLSQVLIXNGYTQSPSDHSLCTLHKFHSFTTLLIYVDDVILVGNDLLKIQRVKXLLDGL 334
           +KL + L+  G+  + SD SL         T + +YVDD+++  +D   I  +   L+  
Sbjct: 7   VKLHRALLSFGFVSTKSDQSLFLRFTPSHITYVFVYVDDILVTSSDTTAITSLIAQLNSK 66

Query: 335 FKIKDLGPLRFFLVLEIAQSPQGITLCQRKY 365
           F +KDLG + +FLV++++ +  G+ L Q KY
Sbjct: 67  FSLKDLGEVHYFLVIQVSYTNNGLHLSQTKY 97


>GSVIVT01010555001 assembled CDS
          Length = 147

 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 30/48 (62%)

Query: 248 SLTVLPNQICKPQKSLYGLKQASRQWILKLSQVLIXNGYTQSPSDHSL 295
            L+V  N++C  +++LYGLKQA R W  K S  +   GYT SP D +L
Sbjct: 23  GLSVESNKVCHLRRALYGLKQAPRAWFAKFSSTIFRLGYTASPYDSAL 70