Jatropha Genome Database

JcCA0155261.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0155261.30 + phase: 0 /pseudo/partial
         (254 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022160001 assembled CDS                                       134   3e-32
GSVIVT01007971001 assembled CDS                                       111   3e-25

>GSVIVT01022160001 assembled CDS
          Length = 303

 Score =  134 bits (338), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 62/73 (84%), Positives = 66/73 (90%)

Query: 9  ATEIVFFDLETTVPNRIGQKFWVLEFGAIIVCPRKLVELESFSTLIRPKDLSVVALKSSR 68
          A EIVFFDLETTVPNR GQ+FWVLEFGAI+VCPRKLVELES+STLIRP DLS VAL+S R
Sbjct: 12 AAEIVFFDLETTVPNRAGQRFWVLEFGAIVVCPRKLVELESYSTLIRPGDLSAVALRSGR 71

Query: 69 SDGITREAVANAP 81
          SDGITRE VA AP
Sbjct: 72 SDGITREVVAGAP 84



 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/96 (52%), Positives = 58/96 (60%), Gaps = 27/96 (28%)

Query: 186 TRSRSNGKLQCGEESSRKSPPSTIGYQRTVPYTRGSLGKV-------------------- 225
           TRSRSNGKL C EESSRKSP +++GYQR VPY RG LGKV                    
Sbjct: 208 TRSRSNGKLMCREESSRKSPTTSLGYQRAVPYARGGLGKVSSFPFSLLKNLHGYLSMPLT 267

Query: 226 -------TEGVKNLFCKAQETKSINKLIKHSHSLLR 254
                  TE VKNL CKA+E  ++N ++KHSHSLLR
Sbjct: 268 NNKSKQMTERVKNLLCKAREKPALNNILKHSHSLLR 303


>GSVIVT01007971001 assembled CDS
          Length = 447

 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 51/80 (63%), Positives = 65/80 (81%)

Query: 10 TEIVFFDLETTVPNRIGQKFWVLEFGAIIVCPRKLVELESFSTLIRPKDLSVVALKSSRS 69
          +EI FFD+ETTVP R+GQ F +LEFGAI+VCPRKLVELES+STL+RP DLS+V+  S R 
Sbjct: 8  SEIAFFDVETTVPTRVGQGFAILEFGAILVCPRKLVELESYSTLVRPHDLSLVSSLSVRC 67

Query: 70 DGITREAVANAPILKKLQIR 89
          +GITR+AV +AP  + +  R
Sbjct: 68 NGITRDAVVSAPNFRDIADR 87