Jatropha Genome Database

JcCA0155261.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0155261.10 + phase: 0 
         (371 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022164001 assembled CDS                                        91   6e-19

>GSVIVT01022164001 assembled CDS
          Length = 83

 Score = 91.3 bits (225), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/73 (64%), Positives = 57/73 (78%), Gaps = 2/73 (2%)

Query: 172 REVFVMNWIISEHLKNKEFTICLDLIKDLVS-RGNFDPVLLSKLGCIQMQIGDLEGAKGS 230
           REVFV+N II  HL +KEF +C+ LI+ L+S R   DP L+SKLGCIQ+QIGDLEGAK S
Sbjct: 4   REVFVVNSIIGHHLSHKEFGVCVSLIRQLLSGRCRDDPALVSKLGCIQLQIGDLEGAKAS 63

Query: 231 FEKVEKL-LEERI 242
           FE VEK+  EER+
Sbjct: 64  FELVEKMGKEERL 76