Jatropha Genome Database

JcCA0155101.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0155101.20 - phase: 0 
         (153 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008288001 assembled CDS                                       238   6e-64
GSVIVT01029221001 assembled CDS                                       171   2e-43

>GSVIVT01008288001 assembled CDS
          Length = 157

 Score =  238 bits (608), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 111/153 (72%), Positives = 130/153 (84%)

Query: 1   MVAPFTGLKSTSAFSVTRKNNTDITSISSKGGRVQCMQVWPPVGKKFFETLSYLPPLSQD 60
           MVAPFTGLKS S F  TRK NTDITS++S GGRV+CM+VWP  G   FETLSYLPPL+ +
Sbjct: 1   MVAPFTGLKSLSTFPGTRKANTDITSVASNGGRVRCMKVWPTEGLMKFETLSYLPPLNDE 60

Query: 61  QLAKEVHYLLRMDRVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSAQVL 120
           QL KEV YLLRM  +PCLEF   + + +RE++RSPGYYDGRYWTMWKLPMFGCTDSAQV+
Sbjct: 61  QLCKEVDYLLRMKWIPCLEFTKLYPYPHREHNRSPGYYDGRYWTMWKLPMFGCTDSAQVI 120

Query: 121 KELEEAKTAYPNSFIRIIGFDNKRQVQCISFIA 153
           KE++EA+TAYP++ IRIIGFDN RQVQCI+FIA
Sbjct: 121 KEVQEARTAYPDAHIRIIGFDNNRQVQCIAFIA 153


>GSVIVT01029221001 assembled CDS
          Length = 169

 Score =  171 bits (432), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 71/124 (57%), Positives = 95/124 (76%), Gaps = 1/124 (0%)

Query: 29  SKGGRVQCMQVWPPVGKKFFETLSYLPPLSQDQLAKEVHYLLRMDRVPCLEFELEHGFVY 88
           S G +  CM+ W P+  K FETLSYLPPLS D +AKE+ Y+L+   +PCLEF+ E G+V+
Sbjct: 40  SNGSKTHCMKTWNPINNKKFETLSYLPPLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVF 98

Query: 89  RENHRSPGYYDGRYWTMWKLPMFGCTDSAQVLKELEEAKTAYPNSFIRIIGFDNKRQVQC 148
           R+N + PGYYDGRYWT+WKLPMFGC D++QVL E+ E K  YPN++IR + FDN+ Q QC
Sbjct: 99  RKNSQIPGYYDGRYWTLWKLPMFGCNDASQVLNEIHECKKTYPNAYIRCLAFDNEHQGQC 158

Query: 149 ISFI 152
           ++F+
Sbjct: 159 MAFV 162