Jatropha Genome Database

JcCA0155091.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0155091.20 - phase: 0 
         (252 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01001439001 assembled CDS                                       413   e-116
GSVIVT01017672001 assembled CDS                                       207   4e-54
GSVIVT01031905001 assembled CDS                                        94   7e-20
GSVIVT01020986001 assembled CDS                                        83   1e-16
GSVIVT01030921001 assembled CDS                                        63   1e-10
GSVIVT01011790001 assembled CDS                                        59   3e-09

>GSVIVT01001439001 assembled CDS
          Length = 253

 Score =  413 bits (1062), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 195/252 (77%), Positives = 225/252 (89%), Gaps = 1/252 (0%)

Query: 1   MYRDVSSCNTYNYGDSLYWDARYVQEAGSFDWYQRYSSLRPFVRRYIPTSSRVLMVGCGN 60
           MYRDVSSCN+YNYGD+LYWDARY+QEAGSFDWYQRYS+LRPFVRRYIPTSSRVLMVGCGN
Sbjct: 1   MYRDVSSCNSYNYGDALYWDARYIQEAGSFDWYQRYSALRPFVRRYIPTSSRVLMVGCGN 60

Query: 61  ALMSEDMVKDGYEDITNIDISSVAIDMMRKKYEHIPQLKYMRMDVRDMXXXXXXXXXXVI 120
           A+MSEDMVKDGYE+I NIDISSVAI+MMR+K+EHI QL+YM+MDV+DM          VI
Sbjct: 61  AVMSEDMVKDGYEEIMNIDISSVAIEMMRRKHEHIHQLQYMQMDVKDMSFFPDESFDCVI 120

Query: 121 DKGTLDSLMCGNDAPISAAQMLGEVSRLLKPGGIHMLITYGDPTVRMLHLSQPVYNWKIV 180
           DKGTLDSLMCG DAPISA++MLGEVSRLLKPGGI+MLITYGDPTVRM HL +PVYNWK+V
Sbjct: 121 DKGTLDSLMCGTDAPISASRMLGEVSRLLKPGGIYMLITYGDPTVRMPHLGRPVYNWKVV 180

Query: 181 LYIIPRPGFERPAGGSSS-RSFLEPVPITENGLLRADFILEDPDSHFIYVCKKMDETTDL 239
           LY+IPRPGF++PAG +SS +S+LEPVP TE GLL   F+LEDPDSH+IY+CKKMDET +L
Sbjct: 181 LYVIPRPGFQKPAGSTSSAKSYLEPVPTTEKGLLLPGFVLEDPDSHYIYICKKMDETAEL 240

Query: 240 HSITHCPLTADV 251
            +I   PLT++V
Sbjct: 241 GNIPAYPLTSEV 252


>GSVIVT01017672001 assembled CDS
          Length = 230

 Score =  207 bits (527), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 105/222 (47%), Positives = 140/222 (63%), Gaps = 2/222 (0%)

Query: 13  YGDSLYWDARYVQEAGSFDWYQRYSSLRPFVRRYIPTSSRVLMVGCGNALMSEDMVKDGY 72
           YG+  YWD RY  E+G FDWYQ+Y++L P +  YIP   RVL+VGCGN+  SE MV DGY
Sbjct: 10  YGEPSYWDERYSHESGPFDWYQKYNALAPLLHLYIPLHHRVLVVGCGNSAFSEGMVNDGY 69

Query: 73  EDITNIDISSVAIDMMRKKYEHIPQLKYMRMDVRDMXXXXXXXXXXVIDKGTLDSLMCGN 132
           +++ NIDISSV I  M++KY   PQLKY+RMDV DM          V+DKGTLDSL+CGN
Sbjct: 70  KEVVNIDISSVVIQAMQRKYSDRPQLKYIRMDVLDMSGFQTGSFDAVVDKGTLDSLLCGN 129

Query: 133 DAPISAAQMLGEVSRLLKPGGIHMLITYGDPTVRMLHLSQPVYNWKIVLYIIPRPGFERP 192
           ++   A +ML EV R+LK  G++MLITYG P  R L L +   +W I L++I +   E  
Sbjct: 130 NSRQLAVKMLKEVERVLKNKGVYMLITYGAPIYR-LRLLRDSCSWTIKLHVIEKFMLEAK 188

Query: 193 AGGSSSRSFLEPVPITENGLLRADFILEDPDSHFIYVCKKMD 234
                +     PVP+ + G      + ++PD H+IY+C K D
Sbjct: 189 T-EHQTWELTNPVPLDDEGSSVEAVLGKNPDVHYIYICIKDD 229


>GSVIVT01031905001 assembled CDS
          Length = 259

 Score = 94.0 bits (232), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 110/238 (46%), Gaps = 23/238 (9%)

Query: 3   RDVSSCNTYNYGDSLYWDARYVQEAGSFDWYQRYSSLRPFVRRYIPTSSRVLMVGCGNAL 62
           R  +      Y D  YWD R+  E   ++W + YS     ++ ++  +  VL +GCGN+ 
Sbjct: 17  RSFAPSTVSAYLDPHYWDERFSDEE-HYEWLKDYSHFSHLIQPHLQPNYSVLEIGCGNSQ 75

Query: 63  MSEDMVKDGYEDITNIDISSVAIDMMRKKY--EHIPQLKYMRMDVRDMXXXXXXXXXXVI 120
           +SE++ K G  +IT ID+S++A++ M+K+   +   ++K +  D+ D+          VI
Sbjct: 76  LSEELYKGGITEITCIDLSAIAVEKMQKRLLSKGYKEIKVLEADMLDL-PFSNECFDVVI 134

Query: 121 DKGTLDSLMCGNDAPIS--------AAQMLGEVSRLLKPGGIHMLITYGDPTVRMLHLSQ 172
           +KGT+D L   +  P +        A   L  V R+LKP G+ + I++G P  R      
Sbjct: 135 EKGTMDVLFVDSGDPWNPLPETVNKAMATLQGVHRVLKPDGVFISISFGQPHFRRPLFEA 194

Query: 173 PVYNWKI-----------VLYIIPRPGFERPAGGSSSRSFLEPVPITENGLLRADFIL 219
           P + W               Y++ +       GG S R  +  + + ++ L   D+I 
Sbjct: 195 PDFTWSFEWSTFGDGFHYFFYLLKKGRRTSNGGGPSQRIEMPSMSLFQDELESEDYIF 252


>GSVIVT01020986001 assembled CDS
          Length = 748

 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 21/195 (10%)

Query: 19  WDARYVQEAG--SFDWYQRYSSLRPFVRRYIPTSS-----------------RVLMVGCG 59
           WD  +       SF+WY  +  L+  +  ++ +++                 ++L+ GCG
Sbjct: 24  WDKFFTIRGSDDSFEWYAEWPQLKDPLLSHLSSTAPPSDPASEPPQPPPPPLQILVPGCG 83

Query: 60  NALMSEDMVKDGYEDITNIDISSVAI-DMMRKKYEHIPQLKYMRMDVRDMXXXXXXXXXX 118
           N+ +SE +   G+  ITN+D S V I DM+R+     P +++  MD+  M          
Sbjct: 84  NSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRSRPDMRWRVMDITSMQFPDGSFDA- 142

Query: 119 VIDKGTLDSLMCGNDAPISAAQMLGEVSRLLKPGGIHMLITYGDPTVRMLHLSQPVYNWK 178
           ++DKG LD+LM     P      L EV R+LK GG  + +T  +  V  L  S+  + WK
Sbjct: 143 ILDKGGLDALMEPELGPKLGKMYLTEVKRVLKSGGKFIGLTLAESHVLGLLFSKFRFGWK 202

Query: 179 IVLYIIPRPGFERPA 193
           + ++++ +    +P+
Sbjct: 203 MSIHVVSQKPSNKPS 217


>GSVIVT01030921001 assembled CDS
          Length = 340

 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 2/112 (1%)

Query: 49  TSSRVLMVGCGNALMSEDMVKDGYEDITNIDISSVAIDMMRKKYEHIPQLKYMRMDVRD- 107
           +S  VL +G GN L+ +++ K G+ D+T  D S  AID+ R   +      Y+   V D 
Sbjct: 159 SSWSVLDIGTGNGLLLQELAKQGFSDLTGTDYSEGAIDLARSLADR-DGFTYINFLVDDV 217

Query: 108 MXXXXXXXXXXVIDKGTLDSLMCGNDAPISAAQMLGEVSRLLKPGGIHMLIT 159
           +          VIDKGTLD++    D PI        VSRL+ PGGI ++ +
Sbjct: 218 LESKLERQFQLVIDKGTLDAIGLHPDGPIKRIMYWDSVSRLVAPGGIFVVTS 269


>GSVIVT01011790001 assembled CDS
          Length = 455

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 4/110 (3%)

Query: 52  RVLMVGCGNALMSEDMVKDGYEDITNIDISSVAIDMMRKKYEH--IPQLKYMRMDVRDMX 109
           RVL VG GN L+ +++ K G+ D+T ID S  AI++ +   +      + ++  D  ++ 
Sbjct: 279 RVLDVGIGNGLLLQELAKQGFSDLTGIDYSEGAINLAQNLADRDGFTSINFLVDD--NLE 336

Query: 110 XXXXXXXXXVIDKGTLDSLMCGNDAPISAAQMLGEVSRLLKPGGIHMLIT 159
                    V+DKGTLD++    D PI        +SRL+ PGGI ++ +
Sbjct: 337 TKLERQFQLVMDKGTLDAIGLHPDDPIKRIMYWDSISRLVVPGGILVITS 386