Jatropha Genome Database

JcCA0155011.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0155011.40 + phase: 0 
         (133 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033099001 assembled CDS                                       215   5e-57
GSVIVT01008935001 assembled CDS                                        50   2e-07

>GSVIVT01033099001 assembled CDS
          Length = 393

 Score =  215 bits (547), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 96/127 (75%), Positives = 114/127 (89%)

Query: 1   MPGIEGPSDYAQEPPRHPSLKINSKQPFNAEPPRSALVSSYVTPVDLFYKRNHGPIPIVD 60
           MPG+ GPSDY++EP RHP L+IN+K PFNAEPPRS L+++YVTPVDLFYKRNHGPIPIVD
Sbjct: 1   MPGLRGPSDYSREPARHPCLRINAKAPFNAEPPRSMLITTYVTPVDLFYKRNHGPIPIVD 60

Query: 61  DIERYSVTISGLIDRPRELFMKDIWKLPKYNVTATLQCAGNRRTAMSNVRKVRGVGWDVS 120
           DIERYSV++ GLI+ P+ L MKDIW LPKY+VTATLQCAGNRRTAMS VR V+GVGWD++
Sbjct: 61  DIERYSVSVRGLIENPKMLSMKDIWDLPKYDVTATLQCAGNRRTAMSKVRTVKGVGWDIA 120

Query: 121 AIGNGLF 127
           AIGN ++
Sbjct: 121 AIGNAVW 127


>GSVIVT01008935001 assembled CDS
          Length = 664

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 2/100 (2%)

Query: 5   EGPSDYAQEPPRHPSLKINSKQPFNAEPPRSALVSSYVTPVDLFYKRNHGPIPIVDDIER 64
           +  SD   EP     ++  + +   + P    +   ++TPV L Y RNHG +P     + 
Sbjct: 43  DSSSDDENEPDWKDLVRKGNSELEPSAPLNRLMHHGFITPVPLHYVRNHGAVP-KGSWDN 101

Query: 65  YSVTISGLIDRPRELFMKD-IWKLPKYNVTATLQCAGNRR 103
           ++V +SGL+ RP    M   + + P      TL CAGNRR
Sbjct: 102 WTVEVSGLVKRPARFTMDQLVNEFPTREFPVTLVCAGNRR 141