Jatropha Genome Database

JcCA0155011.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0155011.30 - phase: 0 
         (382 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033098001 assembled CDS                                       466   e-132
GSVIVT01033286001 assembled CDS                                       157   8e-39
GSVIVT01021443001 assembled CDS                                       151   5e-37
GSVIVT01017233001 assembled CDS                                       147   7e-36
GSVIVT01035803001 assembled CDS                                        80   2e-15

>GSVIVT01033098001 assembled CDS
          Length = 391

 Score =  466 bits (1199), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/363 (63%), Positives = 280/363 (77%), Gaps = 2/363 (0%)

Query: 21  LQNSDFETPPLNIPKNSSIPFQLLNQNTTIPGWSFEGTVLYVTATDTIALPGNGHAIQLG 80
           LQN DFE+PP N+P+NS+ PF+LL  N TIPGW+F+GTV YVTA  TIALPGNGHAIQLG
Sbjct: 26  LQNPDFESPPSNLPENSTAPFELLTANNTIPGWTFDGTVQYVTAGPTIALPGNGHAIQLG 85

Query: 81  QDGKINQTFSPSADYIHYLLTFSLATSGGSNCSSNASVGVSASDRPSVFFFKQNYGKEKW 140
           QDGKINQTF  + + ++Y+LTF+LA  G  NCS+ A + VSA D   VF  KQ+YGKE W
Sbjct: 86  QDGKINQTFIANTNTMNYILTFTLAL-GDQNCSAIADILVSAPDSRGVFSLKQHYGKETW 144

Query: 141 ESYGVYLGSWELEEKINLVIESEATESDGNETCWPLIDKLLLKSIETLVPSNDNLLLNGG 200
           ESYG YLG W   E INLVI+S+ TE + N TCWP++D LLLK + TL   N NLL NGG
Sbjct: 145 ESYGHYLGGWRDGEHINLVIQSQTTEPNPNSTCWPIVDTLLLKGVATLDKGNGNLLPNGG 204

Query: 201 FEFGPEFQSNSSEGILLDPVPTPVLSPLRHWSITGTVKYIDSKNYFVPEGNAAVEIVSGV 260
           FE GP+F SNS+EGILLDPV +P+ S ++ WS+ GTVKYIDSKNYFVPEGNAA+E +SG+
Sbjct: 205 FESGPDFLSNSTEGILLDPVSSPIQSAIQQWSVLGTVKYIDSKNYFVPEGNAAIEFISGI 264

Query: 261 SAGIQAATTLTEGSTYNLEFTLGDANDSCEGNFVVGAQAGFAAQNFTLLSNGTGSATKKS 320
           S GIQ A+TLTEGS YNL+FTLGDANDSC G F++GAQAG   QNFTL S GTGSA   S
Sbjct: 265 STGIQTASTLTEGSAYNLDFTLGDANDSCVGTFILGAQAGSTVQNFTLQSKGTGSAKNFS 324

Query: 321 LEFKADSSIALISFTAYTTTQTKDGVFCGPVVDNIVLRASNGMKSAMKWGILIS-LLFLA 379
           + FKADSS+  ISF +Y+++QTKDGVFCGPVVDN++L+AS G+K  +   +    L+FL 
Sbjct: 325 MTFKADSSVTPISFLSYSSSQTKDGVFCGPVVDNVILQASYGLKPEIPSKVTFCWLVFLV 384

Query: 380 VTL 382
             L
Sbjct: 385 AIL 387


>GSVIVT01033286001 assembled CDS
          Length = 385

 Score =  157 bits (397), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 169/348 (48%), Gaps = 28/348 (8%)

Query: 20  LLQNSDFETPPLNIPKNSSIPFQLLNQNTTIPGWSFEGTVLYVTATDT-----IALPGNG 74
           LL N DFE      PK S++   ++    ++P W  +G V YV+         +A+P   
Sbjct: 48  LLPNGDFE----KGPKASNLKKTVIKGKHSLPDWEIKGLVEYVSGGPQPGGFFLAVPRGV 103

Query: 75  HAIQLGQDGKINQTFSPSADYIHYLLTFSLATSGGSNCSSNASVGVSASDRPSVFFFKQN 134
           HA++LG +  I+Q       +I Y LTF    +    C+ +  + VS   + +    +  
Sbjct: 104 HAVKLGNEASISQNVRVRPGFI-YSLTFGATRT----CAQDEVLRVSIPGQSADLPIQTL 158

Query: 135 YGKEKWESYGVYLGSWELE---EKINLVIESEATESDGNETCWPLIDKLLLKSIETLVPS 191
           Y  +  ++Y     +W      E +N+   +   + D   TC PL+D + +K +  L  +
Sbjct: 159 YSTDGGDTY-----AWAFNATTEVVNVTFHNPGIQED--RTCGPLLDAIAIKQMPPLKLT 211

Query: 192 NDNLLLNGGFEFGPEFQSNSSEGILLDPVPTPVLSPLRHWSITG--TVKYIDSKNYFVPE 249
             +L  NGG+E GP    N S G+LL P    ++SPL  W I     VKYIDSK++ VP 
Sbjct: 212 RGSLAKNGGYETGPHVFKNFSTGVLLLPKQQDLISPLPGWIIESLKPVKYIDSKHFSVPT 271

Query: 250 GNAAVEIVSGVSAGIQAATTLTEGSTYNLEFTLGDANDSCEGNFVVGAQAGFAAQNFTLL 309
           G AA+E++ G  + I          +YNL FT+GDA + C G+  V A A          
Sbjct: 272 GLAAIELIGGRESAIAQIIRTVPNKSYNLTFTIGDAKNGCHGSMTVEAFAAKETVKVPHA 331

Query: 310 SNGTGSATKKSLEFKADSSIALISF-TAYTTTQTKD-GVFCGPVVDNI 355
           S G G     SL+FKA S+   I+F +AY  T+  D G  CGPV+D++
Sbjct: 332 SQGKGEFKAASLKFKALSARTRITFYSAYYHTKLHDFGHMCGPVLDDV 379


>GSVIVT01021443001 assembled CDS
          Length = 392

 Score =  151 bits (381), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 111/359 (30%), Positives = 169/359 (47%), Gaps = 28/359 (7%)

Query: 21  LQNSDFETPPLNIPKNSSIPFQLLNQNTTIPGWSFEGTVLYVTATDT-----IALPGNGH 75
           L N DFE+PP     N      L++  TTIP W   GTV  V +        + +P   H
Sbjct: 31  LLNGDFESPPTGGFSNEG----LVDGPTTIPNWKTNGTVELVESGQKQGGMILIVPQGKH 86

Query: 76  AIQLGQDGKINQTFSPSADYIHYLLTFSLATSGGSNCSSNASVGVSASDRPSVFFFKQNY 135
           A++LG D +I+Q       +I Y +TFS A +     S N SVG ++ +       +  Y
Sbjct: 87  AVRLGNDAEISQEMKVEKGFI-YSITFSAARTCAQLESINVSVGAASQN----IDLQTLY 141

Query: 136 GKEKWESYGVYLGSWEL---EEKINLVIESEATESDGNETCWPLIDKLLLKSIETLVPSN 192
             + W+ Y     +W     EE  ++V  +   E D   TC P+ID + +K + T  P  
Sbjct: 142 NVQGWDPY-----AWAFSAEEEDAHVVFRNPGMEDD--PTCGPIIDDVAIKKLFTPDPPK 194

Query: 193 DNLLLNGGFEFGPEFQSNSSEGILLDPVPTPVLSPLRHWSITG--TVKYIDSKNYFVPEG 250
           DN + NG FE GP    N+S G+LL        S L  W +     V++IDS ++ VP+G
Sbjct: 195 DNAVTNGDFEEGPWMYKNASLGVLLPTNLDEETSSLPGWIVESNRAVRFIDSDHFSVPQG 254

Query: 251 NAAVEIVSGVSAGIQAATTLTEGSTYNLEFTLGDANDSCEGNFVVGAQAGFAAQNFTLLS 310
              +E++SG    I      T    Y L F+LG A DSC+    + A AG  AQN   ++
Sbjct: 255 KRGIELLSGKEGIISQMVATTPNKPYKLTFSLGHAGDSCKQPLAIMAFAGDQAQNIHYVA 314

Query: 311 NGTGSATKKSLEFKADSSIALISF-TAYTTTQTKD-GVFCGPVVDNIVLRASNGMKSAM 367
           N   +     L F + +    ++F + Y  T++ D    CGPVVD++ +  S   ++ +
Sbjct: 315 NANSTFETVDLNFTSKAERTRVAFYSVYYNTRSDDMSSLCGPVVDDVKVWFSGARRNGL 373


>GSVIVT01017233001 assembled CDS
          Length = 405

 Score =  147 bits (372), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 159/348 (45%), Gaps = 19/348 (5%)

Query: 20  LLQNSDFETPPLNIPKNSSIPFQLLNQNTTIPGWSFEGTVLYVTATDT-----IALPGNG 74
           LL N +FE  P    K   +    +  +  IP W   G V Y+ +        + +P   
Sbjct: 26  LLPNGNFEYGP----KPWEMKGTKVMASRAIPKWEISGYVEYIKSGQKQGDMLLIVPEGA 81

Query: 75  HAIQLGQDGKINQTFSPSADYIHYLLTFSLATSGGSNCSSNASVGV-SASDRPSVFFFKQ 133
           +A++LG +  I Q        ++Y +TFS A +     + N SV   S ++   +   + 
Sbjct: 82  YAVRLGNEASIKQKVK-VVKGMYYSITFSAARTCAQEETLNVSVAPNSEANDWGMLPMQT 140

Query: 134 NYGKEKWESYGVYLGSWELEEKINLVIESEATESDGNETCWPLIDKLLLKSIETLVPSND 193
            Y    W+SY    G    +++I + I +     D    C PLID + LK++     +  
Sbjct: 141 MYSSNGWDSYA--WGFQADDKEIAISIHNPGVAED--PACGPLIDSVALKALYPPRRTRA 196

Query: 194 NLLLNGGFEFGPEFQSNSSEGILLDPVPTPVLSPLRHWSITG--TVKYIDSKNYFVPEGN 251
           NLL NG FE GP     +S G+L+ P      SPL  W I     VKYIDS ++ VPEG 
Sbjct: 197 NLLKNGNFEEGPYVFPTASWGVLIPPNIEDDHSPLPGWMIESLKAVKYIDSDHFAVPEGK 256

Query: 252 AAVEIVSGVSAGIQAATTLTEGSTYNLEFTLGDANDSCEGNFVVGAQAGFAAQNFTLLSN 311
             VE+V+G  + +           Y L F++GDAN+SCEG+ VV A AG         S 
Sbjct: 257 RGVELVAGKESALSQVVFTIPNRVYVLSFSVGDANNSCEGSMVVEAFAGLDTVKVPYESK 316

Query: 312 GTGSATKKSLEFKADSSIALISF--TAYTTTQTKDGVFCGPVVDNIVL 357
           G G   +  L FKA S    + F  T YT      G  CGPV+D++ L
Sbjct: 317 GKGGFKRAKLRFKAISKRTRVMFLSTYYTMKNDNSGSLCGPVLDDVKL 364


>GSVIVT01035803001 assembled CDS
          Length = 239

 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 105/239 (43%), Gaps = 27/239 (11%)

Query: 13  IGAVFAD-LLQNSDFETPPLNIPKNSSIPFQLLNQNTTIPGWSFEGTVLYVTATDT---- 67
           I   F D LL N +FE  P    K S +    +     IP W   G + Y+ A       
Sbjct: 17  IALSFTDGLLPNGNFELGP----KPSDMKGTEVIGPHAIPEWETSGFIEYIKAGQKQGDM 72

Query: 68  -IALPGNGHAIQLGQDGKINQTFSPSADYIHYLLTFSLATSGGSNCSSNASVGVSASDRP 126
            + +P    A++LG +  I Q        ++Y +TFS A +    C+    + +S +   
Sbjct: 73  LLVVPEGAFAVRLGNEASIKQRVK-VIKGMYYSITFSAART----CAQEERLNISVAPDW 127

Query: 127 SVFFFKQNYGKEKWESYGVYLGSWELE---EKINLVIESEATESDGNETCWPLIDKLLLK 183
            V   +  Y    W+SY     +W  +   + I +VI +   E D    C PLID +  +
Sbjct: 128 GVLPMQTLYSSNGWDSY-----AWAFQADYDVIEIVIHNPGVEED--PACGPLIDSVAFR 180

Query: 184 SIETLVPSNDNLLLNGGFEFGPEFQSNSSEGILLDPVPTPVLSPLRHWSITG--TVKYI 240
           ++    PS+ NLL NGGFE GP    N+S G+L+ P      SPL  W +     VK+I
Sbjct: 181 ALYPPRPSSKNLLKNGGFEEGPYVFPNTSWGVLIPPNIEDDHSPLPGWMVESLKAVKHI 239