Jatropha Genome Database

JcCA0155011.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0155011.20 + phase: 0 
         (334 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033097001 assembled CDS                                       547   e-156

>GSVIVT01033097001 assembled CDS
          Length = 363

 Score =  547 bits (1410), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 272/336 (80%), Positives = 295/336 (87%), Gaps = 13/336 (3%)

Query: 1   MASVPLSSLCLPQRKLSSLSFSFGISDNLRSGLAS--VGFNSGKKNSGVRFSICRAAAVV 58
           MASVPLSS              FG     +S  +S  + F   KK   VR S+CRAA+VV
Sbjct: 39  MASVPLSSTVF-----------FGSITAKKSRFSSFPLEFRPLKKTQRVRVSVCRAASVV 87

Query: 59  FRDLDADDFRHPLDKQNTLLLRAIPGLNELGKALLGSMTEQIMLLENIGTSVLVSKNQLY 118
           FRDLDADDFRHPLDKQNTL+LRAIPGLNE+GKALLG++TEQ+MLLENIGTSVLVSKNQL 
Sbjct: 88  FRDLDADDFRHPLDKQNTLILRAIPGLNEIGKALLGTVTEQVMLLENIGTSVLVSKNQLS 147

Query: 119 ELHQLMTEAAEILNLEPPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAV 178
           +LHQLM EAAEILNL+ PDLY+RQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAV
Sbjct: 148 DLHQLMLEAAEILNLDAPDLYIRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAV 207

Query: 179 LAHELGHLKCDHGVWLTFANILTLGAYTLPGLGQLIAQSLEEQLFRWLRAAELTCDRAAL 238
           LAHELGHLKCDHGVWLTFANILTLGAY+LPGLG LIA+ LEEQLFRWLRAAELTCDRAAL
Sbjct: 208 LAHELGHLKCDHGVWLTFANILTLGAYSLPGLGGLIARQLEEQLFRWLRAAELTCDRAAL 267

Query: 239 LVAQDPKVVISVLMKLAGGSPSVADQLNVDAFLEQARSYDKASSSPMGWYIRNAQTRQLS 298
           LVAQDPKVVISVLMKLAGGSPS+ADQLNVDAFLEQARSY+KASSSP+GWYIRNAQTRQLS
Sbjct: 268 LVAQDPKVVISVLMKLAGGSPSLADQLNVDAFLEQARSYEKASSSPVGWYIRNAQTRQLS 327

Query: 299 HPLPVLRAREIDEWSRSREYRTLLKRALERNAVQNV 334
           HPLPVLRAREIDEWSRS++YR+LL RA   N+VQ +
Sbjct: 328 HPLPVLRAREIDEWSRSKDYRSLLSRAAPINSVQKI 363