Jatropha Genome Database

JcCA0155011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0155011.10 - phase: 2 /partial
         (110 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033096001 assembled CDS                                       169   3e-43

>GSVIVT01033096001 assembled CDS
          Length = 127

 Score =  169 bits (428), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 85/110 (77%), Positives = 88/110 (80%)

Query: 1   RNSVNRPPTPDAAEDPGKEPSLQEIINIKLIESGXXXXXXXXXXXXXIECGWKDEMKALC 60
           R SVNRPPTPDA  D  KEPS+ EIINIKLIESG             IECGWKDEMKALC
Sbjct: 18  RPSVNRPPTPDARLDREKEPSVLEIINIKLIESGEKERLMELLRERLIECGWKDEMKALC 77

Query: 61  RAFIKKKGRNNVTVDDLVHVITPKGRASIPDSIKAELLQRIRAFLVQAAV 110
           RAF+KKKGRNNVTVDDLVHVI PKGRASIPDS+KAELLQRIR FLV AAV
Sbjct: 78  RAFVKKKGRNNVTVDDLVHVIMPKGRASIPDSVKAELLQRIRTFLVSAAV 127