Jatropha Genome Database

JcCA0154851.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154851.30 + phase: 0 /partial
         (112 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020170001 assembled CDS                                       152   2e-38
GSVIVT01032526001 assembled CDS                                       149   3e-37

>GSVIVT01020170001 assembled CDS
          Length = 445

 Score =  152 bits (385), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 68/111 (61%), Positives = 90/111 (81%)

Query: 1   MEDEKDAFYVVRKGDIVGIYKSLSDCQAQAGSSVCDPSVTVFKGYGLPKEAEEHLLSHGL 60
           ME+EKDAF+VVRKGD+VG+YK+ SDCQAQ GSS+CDP V+V+KGY LPK+ EE+L+S GL
Sbjct: 144 MEEEKDAFFVVRKGDVVGVYKTFSDCQAQVGSSICDPPVSVYKGYYLPKDTEEYLVSRGL 203

Query: 61  KNATYSIHAVDVQKDLFGKIVPCPFQQPNSSGGKALDYYSPPQRLQDVLGL 111
           +NA Y+I A D+++DLFGK++PC FQQ  SS G+ L    P +  Q+V+GL
Sbjct: 204 RNALYTIRAADLKEDLFGKLMPCAFQQTASSKGEILSKDLPRESSQEVMGL 254


>GSVIVT01032526001 assembled CDS
          Length = 287

 Score =  149 bits (375), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 72/109 (66%), Positives = 87/109 (79%), Gaps = 1/109 (0%)

Query: 1   MEDEKDAFYVVRKGDIVGIYKSLSDCQAQAGSSVCDPSVTVFKGYGLPKEAEEHLLSHGL 60
           ME+EKDAFYVVRKGDIVG+YKS S+CQAQAG SVCDPSV+V+KGY LPK+AE  L SHGL
Sbjct: 1   MEEEKDAFYVVRKGDIVGLYKSFSECQAQAGFSVCDPSVSVYKGYCLPKDAEVFLASHGL 60

Query: 61  KNATYSIHAVDVQKDLFGKIVPCPFQQPNSSGGKALDYYSPPQRLQDVL 109
           KNA+Y I+A DV+ D+FGK+  CPFQQP SS G +     P +RL + +
Sbjct: 61  KNASYVINAADVKGDIFGKLQACPFQQPGSSKGTSSQDL-PQKRLHEAI 108