Jatropha Genome Database

JcCA0154831.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154831.20 - phase: 2 /TE
         (283 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012382001 assembled CDS                                        92   2e-19
GSVIVT01028343001 assembled CDS                                        83   1e-16
GSVIVT01015960001 assembled CDS                                        62   4e-10
GSVIVT01013341001 assembled CDS                                        61   5e-10
GSVIVT01000641001 assembled CDS                                        60   1e-09

>GSVIVT01012382001 assembled CDS
          Length = 952

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 31/171 (18%)

Query: 85  VRLASQFMHNQSEEPVNDVFRTVK---------ILSREGDHVXEVXSFKYSGYFDVEWAG 135
           V L SQ+MH  +   +  V R ++         I+ R   H          G+ D +WAG
Sbjct: 751 VSLVSQYMHAPTVVHLCMVKRILRYLKKTIGRGIVMRRNGHT------DIIGFSDSDWAG 804

Query: 136 SISDRKSISGYFTFMGNNLITXE-------IRSKMXLLYVLLTPNLGACELIWLKELMEE 188
           +  DR+S +GY  F+G NL++ +        RS     Y  +     +CE++WLK L+ +
Sbjct: 805 NTIDRRSTTGYCMFVGGNLVSWKSKKQPVVARSSAEAEYRAMAA--ASCEMVWLKNLLTD 862

Query: 189 IDYPFDEEIKLFCNNKAALQ-------HHRTKHVEVDRHFIKEKLENKIIQ 232
           + +     +KLFC+N+AA+        H RTKH+EVD HFI++++++K+IQ
Sbjct: 863 LGFSPTSPMKLFCDNQAAMHIAANPVFHERTKHIEVDCHFIRQQVQSKVIQ 913


>GSVIVT01028343001 assembled CDS
          Length = 2295

 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 62/102 (60%), Gaps = 16/102 (15%)

Query: 139  DRKSISGYFTFMGNNLITXE-------IRSKMXLLYVLLTPNLGACELIWLKELMEEIDY 191
            DR+S SGY  F+G NLI+ +        RS     Y  +   L  CELIWL+ L++E+ +
Sbjct: 1466 DRRSTSGYCVFIGGNLISWKSKKQDVVARSSAEAEYRAMA--LATCELIWLRHLLQELRF 1523

Query: 192  PFDEEIKLFCNNKAALQ-------HHRTKHVEVDRHFIKEKL 226
              DE++KL C+N+AAL        H RTKH+EVD HFI+EK+
Sbjct: 1524 GKDEQMKLICDNQAALHIASNPVFHERTKHIEVDCHFIREKI 1565


>GSVIVT01015960001 assembled CDS
          Length = 1205

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 7/59 (11%)

Query: 180 IWLKELMEEIDYPFDEEIKLFCNNKAALQ-------HHRTKHVEVDRHFIKEKLENKII 231
           +W++ L+EE+       +KL+C+NKA +        H RTKHVEVD+HFIKEK++N ++
Sbjct: 1   MWIRRLLEELKMTGSSPMKLYCDNKAVISVAYNPVLHDRTKHVEVDKHFIKEKIDNGLV 59


>GSVIVT01013341001 assembled CDS
          Length = 503

 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 60/108 (55%), Gaps = 12/108 (11%)

Query: 92  MHNQSEEPVNDVFRTVKIL---SREGDHVXEVXSFKYSGYFDVEWAGSISDRKSISGYFT 148
           MH+  E  +N V++ ++ L    R+G H  +   FK   + D +WAGSI DR+S SGY T
Sbjct: 1   MHSPYEAHMNVVYKILQYLKGTPRKGLHFGKHDQFKIEAFTDADWAGSIEDRRSTSGYCT 60

Query: 149 FMGNNLITXEIRSKMXLLYVLLTPNL-------GACELIWLKELMEEI 189
           F+  NLIT   RSK   +    +  +       G CE++W+K ++EE+
Sbjct: 61  FVFGNLIT--WRSKKQNVVARSSAEVKFRSIAHGICEVLWIKRVLEEL 106


>GSVIVT01000641001 assembled CDS
          Length = 947

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 85/178 (47%), Gaps = 19/178 (10%)

Query: 74  LSHTQPNIAYFVRLASQFMHNQSEEPVNDVFRTVKILSREGDHVXEVXSFKYS---GYFD 130
           L+ T+P+I + V L S++M N +E       +  + L    D        K S   G+ D
Sbjct: 246 LTATRPDIMHSVSLISRYMENPTELHFLAAKKICRYLQGTKDFGLFYKKGKRSDLIGFTD 305

Query: 131 VEWAGSISDRKSISGYFTFMGNNLITXEIRSKMXLLYVLLT-------PNLGACELIWLK 183
            ++AG   +R+S SGY   +G   ++    SK   +  L T         + AC+ IWL+
Sbjct: 306 SDYAGDQDNRRSTSGYVFMLGTGAVS--WSSKKQPIVTLSTTEAEFVAATVCACQAIWLR 363

Query: 184 ELMEEIDYPFDEEIKLFCNNKAALQ-------HHRTKHVEVDRHFIKEKLENKIIQFI 234
           +++EE+         +FC+N + ++       H R+KH++V  +F+++   + +I  +
Sbjct: 364 KILEELHLKQVGATTIFCDNSSTIKLSKNPVLHGRSKHIDVKYYFLRDLSNDGVIDLV 421