Jatropha Genome Database

JcCA0154831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154831.10 + phase: 0 
         (295 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012136001 assembled CDS                                       431   e-121
GSVIVT01015855001 assembled CDS                                       404   e-113
GSVIVT01035161001 assembled CDS                                       105   3e-23
GSVIVT01029831001 assembled CDS                                        98   4e-21

>GSVIVT01012136001 assembled CDS
          Length = 289

 Score =  431 bits (1108), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 203/245 (82%), Positives = 216/245 (88%)

Query: 15  RPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDEITRKYKGKTVMTDQERYE 74
           +PVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDE+T KYKGKTVMT  ERYE
Sbjct: 9   KPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDEVTHKYKGKTVMTGSERYE 68

Query: 75  SLRHCRWVDEVIPDAPWVLTPEFLDKHQIDYVAHDSLPYADATGAGKDVYEFVKAIGKFK 134
           SLRHCRWVDEVIPDAPWVLT EF+DKH+IDYVAHDSLPYADA+GAGKDVYEFVK+IGKFK
Sbjct: 69  SLRHCRWVDEVIPDAPWVLTQEFIDKHEIDYVAHDSLPYADASGAGKDVYEFVKSIGKFK 128

Query: 135 ETKRTDGISTSDIIMRIVKDYNEYVMRNLARGYSRKELGVSYVKEKRLRAHMXXXXXXXX 194
           ETKRTDGISTSDIIMRIVKDYN+YVMRNL RGY+RK+LGVSYVKEKRLR +M        
Sbjct: 129 ETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYTRKDLGVSYVKEKRLRVNMGLKKLHEK 188

Query: 195 XXXXXXXXXXXIQIVAKTATVHRNEWVENADRLVAGFLEMFEERCHKMGTAIRDRIQEHL 254
                      IQIVAKTA +HRNEWVENADR VAGFLEMFEE CHKMGTAIRDRIQE L
Sbjct: 189 VKKHQEKVGEKIQIVAKTAGMHRNEWVENADRFVAGFLEMFEESCHKMGTAIRDRIQEQL 248

Query: 255 RKQQL 259
           ++QQL
Sbjct: 249 KRQQL 253


>GSVIVT01015855001 assembled CDS
          Length = 305

 Score =  404 bits (1038), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/288 (69%), Positives = 215/288 (74%), Gaps = 35/288 (12%)

Query: 8   TADPPEDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDEITRKYKGKTVM 67
           T+   +D PVRVYADGIYDLFHFGHARSLEQAKK FPNTYLLVGCCNDE T K+KGKTVM
Sbjct: 18  TSLSGDDGPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVM 77

Query: 68  TDQERYESLRHCRWVDEVIPDAPWVLTPEFLDKHQIDYVAHDSLPYADATGAGKDVYEFV 127
            + ERYESLRHC+WVDEVIPDAPWVLT EFLDKH+IDYVAHDSLPYADA+GAG DVYEFV
Sbjct: 78  NEVERYESLRHCKWVDEVIPDAPWVLTQEFLDKHKIDYVAHDSLPYADASGAGNDVYEFV 137

Query: 128 KAIGKFKETKRTDGISTSDIIMRIVKDYNEYVMRNLARGYSRKELGVSYVKEKRLRAHMX 187
           K+IGKFKETKRTDGISTSDIIMRIVKDYN+YVMRNL RGY+RK+LGVSYVKEKRLR +M 
Sbjct: 138 KSIGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYTRKDLGVSYVKEKRLRVNMR 197

Query: 188 XXXXXXXXXXXXXXXXXX-----------------------------------IQIVAKT 212
                                                                IQIVAKT
Sbjct: 198 LKKLQEKVKEQQEKVEQKGNMNILVSTEQGAKHNTWDGYKETVKKQRNGDAKIIQIVAKT 257

Query: 213 ATVHRNEWVENADRLVAGFLEMFEERCHKMGTAIRDRIQEHLRKQQLI 260
           A +HRNEWVENADR VAGFLEMFEE CHKMGTAIRDRIQE L  QQ++
Sbjct: 258 AGMHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGQQIL 305


>GSVIVT01035161001 assembled CDS
          Length = 362

 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 55/136 (40%), Positives = 82/136 (60%), Gaps = 8/136 (5%)

Query: 22  DGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDEITRKYKGKTVMTDQERYESLRHCRW 81
           DG +DL H+GHA +L QAK L     L+VG  +DE     KG  V++ +ER   +   +W
Sbjct: 2   DGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKGPPVLSMEERLVLVSGLKW 59

Query: 82  VDEVIPDAPWVLTPEFLD----KHQIDYVAHDSLPYADATGAGKDVYEFVKAIGKFKETK 137
           VDEVI +AP+ +T +F+D    +H+IDY+ H   P     G   D Y   K  G++K+ K
Sbjct: 60  VDEVIANAPYAITEQFMDTLFNEHKIDYIIHGDDPCLLPDGT--DAYALAKKAGRYKQIK 117

Query: 138 RTDGISTSDIIMRIVK 153
           RT+G+S++DI+ RI+ 
Sbjct: 118 RTEGVSSTDIVGRILS 133



 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 9/166 (5%)

Query: 19  VYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDEITRKYKGK--TVMTDQERYESL 76
           VY DG +DLFH GH   L+ A++L    +LLVG   D+   +++G    +M   ER  S+
Sbjct: 198 VYIDGAFDLFHAGHVEILKNARQL--GDFLLVGIHTDQTVSEHRGAHYPIMHLHERSLSV 255

Query: 77  RHCRWVDEVIPDAPWVLTPEFLDKHQIDYVAHDSLPYADA-TGAGKDVYEFVKAIGKFKE 135
             CR+VDEVI  APW +T + +    I  V H ++  +++     +D YE  K++G F  
Sbjct: 256 LACRYVDEVIIGAPWDVTKDMITTFNISLVVHGTVAESNSFLNGARDPYEVPKSMGIFHM 315

Query: 136 TKRTDGISTSDIIMRIVKDYNEYVMRNLARGYSRKELGVSYVKEKR 181
            +    I+T+ +  RI+ ++  Y+ RN+ +  S K+    Y  EK+
Sbjct: 316 LESPKDITTTSVAQRIIANHEAYMKRNVKKAESEKK----YYAEKK 357


>GSVIVT01029831001 assembled CDS
          Length = 362

 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 77/135 (57%), Gaps = 8/135 (5%)

Query: 22  DGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDEITRKYKGKTVMTDQERYESLRHCRW 81
           DG +D+ H+GH  +L QA+ L     L+VG  +D      KG  V    ER   +   +W
Sbjct: 2   DGCFDMMHYGHCNALRQARAL--GDQLVVGVVSDAEITANKGPPVTPLNERMIMVSGVKW 59

Query: 82  VDEVIPDAPWVLTPEFL----DKHQIDYVAHDSLPYADATGAGKDVYEFVKAIGKFKETK 137
           VDEVIPDAP+ +T +F+    D++ IDY+ H   P     G   D Y   K  G++K+ K
Sbjct: 60  VDEVIPDAPYAITEDFMKKLFDEYNIDYIIHGDDPCILPDGT--DAYALAKKAGRYKQIK 117

Query: 138 RTDGISTSDIIMRIV 152
           RT+G+S++DI+ R++
Sbjct: 118 RTEGVSSTDIVGRML 132



 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 81/155 (52%), Gaps = 5/155 (3%)

Query: 19  VYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDEITRKYKG--KTVMTDQERYESL 76
           VY DG +DLFH GH   L+ A+ L    +LLVG   D+     +G  + +M   ER  S+
Sbjct: 198 VYIDGAFDLFHAGHVEILKLARGL--GDFLLVGIHTDQTVSANRGAHRPIMNLHERSLSV 255

Query: 77  RHCRWVDEVIPDAPWVLTPEFLDKHQIDYVAHDSLPYADATGAGK-DVYEFVKAIGKFKE 135
             CR+VDEVI  APW ++ + +    I  V H ++   +    GK D Y    ++G +++
Sbjct: 256 LACRYVDEVIIGAPWEVSKDMITTFNISLVVHGTVAEYNNFPKGKEDPYAIPISLGIYEQ 315

Query: 136 TKRTDGISTSDIIMRIVKDYNEYVMRNLARGYSRK 170
            +    I+T+ II RIV ++  Y  RN  +  S K
Sbjct: 316 LESPLDITTTTIIRRIVSNHEAYQKRNEKKAESEK 350