Jatropha Genome Database

JcCA0154801.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154801.30 + phase: 0 
         (68 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034412001 assembled CDS                                        67   2e-12
GSVIVT01034410001 assembled CDS                                        58   9e-10
GSVIVT01034392001 assembled CDS                                        57   2e-09
GSVIVT01019136001 assembled CDS                                        55   6e-09
GSVIVT01037829001 assembled CDS                                        55   7e-09
GSVIVT01012919001 assembled CDS                                        53   3e-08
GSVIVT01034399001 assembled CDS                                        53   3e-08
GSVIVT01019134001 assembled CDS                                        52   5e-08
GSVIVT01034396001 assembled CDS                                        50   2e-07

>GSVIVT01034412001 assembled CDS
          Length = 218

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 45/62 (72%), Gaps = 6/62 (9%)

Query: 1   MNKFGKKAENFAQVVREHV------GATCKRKVNLGDKILQVGAVQKIFRQLFRVKEEEK 54
           MNK GKKA++F   VREHV        T K K++LG +ILQVG V+KIF++LFRV+E EK
Sbjct: 52  MNKLGKKADSFVNGVREHVRLAPNISETVKGKLSLGARILQVGGVEKIFKRLFRVREGEK 111

Query: 55  LL 56
           LL
Sbjct: 112 LL 113


>GSVIVT01034410001 assembled CDS
          Length = 343

 Score = 57.8 bits (138), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/62 (51%), Positives = 42/62 (67%), Gaps = 6/62 (9%)

Query: 1   MNKFGKKAENFAQVVREHV------GATCKRKVNLGDKILQVGAVQKIFRQLFRVKEEEK 54
           +NK  KKA+NF   VREHV        T K K++LG +ILQVG V+++F+Q+F V E EK
Sbjct: 171 INKNRKKADNFVDGVREHVRLGPKFSETVKGKLSLGARILQVGGVKRVFKQIFVVGEGEK 230

Query: 55  LL 56
           LL
Sbjct: 231 LL 232


>GSVIVT01034392001 assembled CDS
          Length = 1633

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 42/62 (67%), Gaps = 6/62 (9%)

Query: 1    MNKFGKKAENFAQVVREHV------GATCKRKVNLGDKILQVGAVQKIFRQLFRVKEEEK 54
            +NK  KKA+NF   VREHV        T K K++LG +IL+VG V+++F+Q+F V E EK
Sbjct: 1457 INKNRKKADNFVDGVREHVRLGPKFSETVKGKLSLGARILRVGGVKRVFKQIFGVGEGEK 1516

Query: 55   LL 56
            LL
Sbjct: 1517 LL 1518


>GSVIVT01019136001 assembled CDS
          Length = 214

 Score = 55.1 bits (131), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 41/62 (66%), Gaps = 6/62 (9%)

Query: 1   MNKFGKKAENFAQVVREHV------GATCKRKVNLGDKILQVGAVQKIFRQLFRVKEEEK 54
           MN   KKA+NF   VREHV        T K K++LG +ILQ+G ++++FRQ F V+E EK
Sbjct: 42  MNNNRKKADNFVDGVREHVRLGLKFSETVKGKLSLGARILQIGGMKRVFRQNFGVREGEK 101

Query: 55  LL 56
           LL
Sbjct: 102 LL 103


>GSVIVT01037829001 assembled CDS
          Length = 214

 Score = 55.1 bits (131), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 41/62 (66%), Gaps = 6/62 (9%)

Query: 1   MNKFGKKAENFAQVVREHV------GATCKRKVNLGDKILQVGAVQKIFRQLFRVKEEEK 54
           MN   KKA+NF   VREHV        T K K++LG +ILQ+G V+++F+Q F V+E EK
Sbjct: 42  MNNNRKKADNFVDGVREHVRLGLKFSETVKGKLSLGARILQIGGVKRVFKQNFGVREGEK 101

Query: 55  LL 56
           LL
Sbjct: 102 LL 103


>GSVIVT01012919001 assembled CDS
          Length = 195

 Score = 52.8 bits (125), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 6/62 (9%)

Query: 1   MNKFGKKAENFAQVVREHV------GATCKRKVNLGDKILQVGAVQKIFRQLFRVKEEEK 54
           MNK GKK  +FA  VREHV        T K K++LG +I+Q G  +KIF+ +F V E E+
Sbjct: 84  MNKLGKKTHSFAFRVREHVRLGPKLSETVKGKLSLGARIIQEGGREKIFKHIFSVNEGEE 143

Query: 55  LL 56
           LL
Sbjct: 144 LL 145


>GSVIVT01034399001 assembled CDS
          Length = 212

 Score = 52.8 bits (125), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 6/62 (9%)

Query: 1   MNKFGKKAENFAQVVREHV------GATCKRKVNLGDKILQVGAVQKIFRQLFRVKEEEK 54
           MNK  KK++NF   VREHV        T K  ++LG +ILQ+G V+++F Q+F  +E EK
Sbjct: 42  MNKNNKKSDNFVDGVREHVRLGPKFSETVKGNLSLGARILQLGGVKRVFNQIFDGREGEK 101

Query: 55  LL 56
           LL
Sbjct: 102 LL 103


>GSVIVT01019134001 assembled CDS
          Length = 217

 Score = 52.4 bits (124), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 42/62 (67%), Gaps = 7/62 (11%)

Query: 1   MNKFGKKAENFAQVVREHV------GATCKRKVNLGDKILQVGAVQKIFRQLFRVKEEEK 54
           +NK  KKA+NF   VREHV        T K K++LG +ILQVG V+++F+Q+F V E EK
Sbjct: 42  INKNRKKADNFVDGVREHVRLGPKFSETVKGKLSLGARILQVGGVKRVFKQIFGV-EGEK 100

Query: 55  LL 56
           LL
Sbjct: 101 LL 102


>GSVIVT01034396001 assembled CDS
          Length = 217

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 7/57 (12%)

Query: 6   KKAENFAQVVREHV------GATCKRKVNLGDKILQVGAVQKIFRQLFRVKEEEKLL 56
           KKA+NF   VREHV        T K K++LG +ILQVG V+++F+Q+F V E EKLL
Sbjct: 47  KKADNFVDGVREHVRLGPKFSETVKGKLSLGARILQVGGVKRVFKQIFGV-EGEKLL 102