Jatropha Genome Database

JcCA0154771.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154771.20 - phase: 0 
         (175 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021973001 assembled CDS                                       326   3e-90

>GSVIVT01021973001 assembled CDS
          Length = 174

 Score =  326 bits (836), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 154/175 (88%), Positives = 165/175 (94%), Gaps = 1/175 (0%)

Query: 1   MGREVSESCVDSLLTEMVSSYCNRFDANKPELAGRRIEAIGYQVGHQLAERYTMERPRFS 60
           MGREVSESCV+SLLTEMVSSYC RF A+KP+LA RRIEAIGYQVGHQL+ERYTMERPRFS
Sbjct: 1   MGREVSESCVESLLTEMVSSYCTRFYADKPDLAARRIEAIGYQVGHQLSERYTMERPRFS 60

Query: 61  DHLEAIKFICKDFWSEVFKKQIDNLKTNHRGTFVLQDNRFRWLARMSVDPTIESGGASQD 120
           DHLEAIKFICKDFWSE+FKKQIDNLKTNHRGTFVLQDN+FRWL+RMSVDP+ E+ G++QD
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNKFRWLSRMSVDPSPENTGSAQD 120

Query: 121 PSALAENKATQAMSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 175
           PS   ENKA QA SMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 121 PST-DENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 174