Jatropha Genome Database

JcCA0154771.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154771.10 - phase: 0 /pseudo
         (340 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000171001 assembled CDS                                        52   3e-07
GSVIVT01001527001 assembled CDS                                        48   7e-06

>GSVIVT01000171001 assembled CDS
          Length = 326

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 242 IQKLISKKQHIEAIGIIHAFKLANKFPPVLLLKDYL-DNSXXXXXXXXXXXXSLEGQIEA 300
           I+ L++  + I+A+  +HAF+L  +FPPV LLK YL D              +  G  +A
Sbjct: 176 IEVLVNGGRQIDAVHFVHAFELTERFPPVPLLKTYLKDLRRNSQGKGGNMGGAGGGLGDA 235

Query: 301 REKRIADVKCALRCIGNYNIEYGPSLGSLHQMVVSLE 337
             + +A +K  +RC+  Y +E   +L  L + V  LE
Sbjct: 236 NAQELAALKAVIRCVEEYKLEADYALDPLQKRVAQLE 272


>GSVIVT01001527001 assembled CDS
          Length = 218

 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 49/98 (50%)

Query: 242 IQKLISKKQHIEAIGIIHAFKLANKFPPVLLLKDYLDNSXXXXXXXXXXXXSLEGQIEAR 301
           I+ LI+  + I+A+ +  AF+L  +F PV LLK YL  +            S   Q E  
Sbjct: 25  IEILINSGRQIDAVNLAFAFELTEQFSPVPLLKSYLKEARKASSPLKPGNASPTAQNEVN 84

Query: 302 EKRIADVKCALRCIGNYNIEYGPSLGSLHQMVVSLEEG 339
           E+ +  +K  ++CI ++ +E    L  L + VV LE+ 
Sbjct: 85  ERELTALKAVIKCIEDHKLEEEYPLDPLQKRVVQLEKA 122