Jatropha Genome Database

JcCA0154651.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154651.20 + phase: 0 
         (568 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009259001 assembled CDS                                       932   0.0  

>GSVIVT01009259001 assembled CDS
          Length = 558

 Score =  932 bits (2409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/567 (78%), Positives = 496/567 (87%), Gaps = 10/567 (1%)

Query: 1   MENSSLPHDSLFLGFDSSTQSLKATVLDSNLNIVKSELVHFDTDLPHYKTKDGVYRDPSD 60
           ME+ SLPHDSLFLGFDSSTQSLKATVLDSNLN+V SE+VHFD+ LPHY+T+DGVYRD S+
Sbjct: 1   MEDCSLPHDSLFLGFDSSTQSLKATVLDSNLNLVTSEIVHFDSQLPHYRTRDGVYRDASE 60

Query: 61  NGKIVSPTLMWVEALDLILQRLQNSGFDFGKIAALSGSGQQHGSVYWKKGXXXXXXXXXX 120
           NG+IVSPTLMWVEAL+L+LQ+L  S  DFGKIAA+SGSGQQHGSVYWK G          
Sbjct: 61  NGRIVSPTLMWVEALELVLQKLSKSKLDFGKIAAISGSGQQHGSVYWKSGSSAILSSLDP 120

Query: 121 XXXXVDQLGNAFSIKESPIWMDSSTTTQCREIEKAVGGALELSKLTGSRGYERFTGPQIR 180
               V QLG+AFS KESPIWMDSSTT QCREIE+AVGGALELS+LTGSR +ER+TGPQIR
Sbjct: 121 SKPLVGQLGDAFSTKESPIWMDSSTTEQCREIEEAVGGALELSRLTGSRAHERYTGPQIR 180

Query: 181 KIFQTQPETYNDTERISLVSSFMASLLIGAYACIDHTDGAGMNLMDIKQKVWSEIALEAT 240
           KIF   PE YN TERISLVSSFMASLLIG+YACID TDGAGMNLMDIKQ+ WS+IALEAT
Sbjct: 181 KIFLKLPEIYNQTERISLVSSFMASLLIGSYACIDETDGAGMNLMDIKQRAWSKIALEAT 240

Query: 241 APGLKEKVGELAPAYDVAGHIAPYFVERYKFNKNCVVVQWSGDNPNSLAGLTLSIPGDLA 300
           AP L+EK+G+LAPA+ VAG IAPYFVER+ FNKNC++VQWSGDNPNSLAGLTL+ PGDLA
Sbjct: 241 APSLEEKLGKLAPAHAVAGFIAPYFVERFHFNKNCLIVQWSGDNPNSLAGLTLNTPGDLA 300

Query: 301 ISLGTSDTVFGIATDPQPRLEGHVLPNPVDTEGYMVMLVYKNGSLTREVSQSDNNHELDV 360
           ISLGTSDTVFGI ++PQP LEGHV PNPVDTEGYMVML YKNGSLTRE          DV
Sbjct: 301 ISLGTSDTVFGITSNPQPSLEGHVFPNPVDTEGYMVMLCYKNGSLTRE----------DV 350

Query: 361 RNCYAEKSWEVFNKFLEQTPPLNDGKLGFYYKDHEILPPLPVGFHRYILQNFMGESLEGV 420
           RN  A++SWEVFN+FLE+TPPLN GK+GFYYKDHEILPPLPVGFHRY+LQ F GE+L+G+
Sbjct: 351 RNRCAKESWEVFNEFLEKTPPLNGGKIGFYYKDHEILPPLPVGFHRYVLQGFTGENLDGI 410

Query: 421 NEQEVQEFDPASEVRALIEGQFLSMRAHAERFGMPIPPKRIIATGGASANQSILNSIASI 480
           NE EV+EFDP+SEVRA+IEGQFLSMR HAERFGMP PPKRIIATGGASAN SIL SIASI
Sbjct: 411 NECEVEEFDPSSEVRAVIEGQFLSMRGHAERFGMPSPPKRIIATGGASANHSILKSIASI 470

Query: 481 FGCDVHTVERPDSASLGAALRAAHGWLCNKKGSFVPIACLYKYKLEKSALSCKLSVSAGN 540
           FGCDV+TV+RPDSASLGAALRAAHGWLCN +G FVP +CLYK KLEK++LSCKL+V+AG+
Sbjct: 471 FGCDVYTVQRPDSASLGAALRAAHGWLCNTRGKFVPTSCLYKDKLEKTSLSCKLAVTAGD 530

Query: 541 QELVSKYALLMKKRMEIENRLVEKLGR 567
           + LVSKY LLMKKRMEIE  LV+KLGR
Sbjct: 531 KPLVSKYGLLMKKRMEIEKHLVQKLGR 557