Jatropha Genome Database

JcCA0154651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154651.10 + phase: 1 /partial
         (181 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029697001 assembled CDS                                       316   4e-87

>GSVIVT01029697001 assembled CDS
          Length = 784

 Score =  316 bits (810), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 142/181 (78%), Positives = 165/181 (91%), Gaps = 1/181 (0%)

Query: 1   SIMEPFRRHLYTYISLSGPQLGYLYSSNSLFNSGMWFMKKFRGTQCIHQLTFTDDPNLKN 60
           S MEP+ R+L+TY+S+SGP LGYLYSSNSLFNSG+W +KKF+GTQCIHQLT TDDP+L+N
Sbjct: 605 SSMEPYLRYLHTYVSISGPHLGYLYSSNSLFNSGLWILKKFKGTQCIHQLTLTDDPDLQN 664

Query: 61  TFFYRLCEQKTLENFRHIILISSPQDGYVPYHSARIELCRAASLDYSRKGRIFLEMLNNC 120
           TFFY+LC+QKTL+NF++IIL+SSPQDGYVPYHSARIELC+ AS DYS+KG++FLEMLN C
Sbjct: 665 TFFYKLCKQKTLDNFQNIILLSSPQDGYVPYHSARIELCQGASWDYSKKGKVFLEMLNEC 724

Query: 121 LDQIRAPTSQPRVFMRCDVNFDTSNHGRNFNSFIGRTAHIEFLESDIFARFIMWSFQELF 180
           LDQIR P S+ RVFMRCDVNFDTSN GRN N+ IGR AHIEFLE+DIFARFIMWSF ELF
Sbjct: 725 LDQIRGP-SEGRVFMRCDVNFDTSNQGRNLNTIIGRAAHIEFLETDIFARFIMWSFPELF 783

Query: 181 R 181
           R
Sbjct: 784 R 784